hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04354575/chunk_1/iprscan-20080502-04354575.nocrc
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Query sequence: KIAA1499
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF05021.5.ls NPL4 family                                    728.1   5.6e-216   1
PF05021.5.fs NPL4 family                                    726.1   2.1e-215   1
PF05020.5.fs NPL4 family, putative zinc binding region      417.8   2.7e-126   1
PF05020.5.ls NPL4 family, putative zinc binding region      419.8   3.6e-123   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF05020.5.fs   1/1     147   289 ..     1   149 []   417.8 2.7e-126
PF05020.5.ls   1/1     147   289 ..     1   149 []   419.8 3.6e-123
PF05021.5.fs   1/1     291   600 ..     1   338 []   726.1 2.1e-215
PF05021.5.ls   1/1     291   600 ..     1   338 []   728.1 5.6e-216

Alignments of top-scoring domains:
PF05020.5.fs: domain 1 of 1, from 147 to 289: score 417.8, E = 2.7e-126
                   *->rViEDevDqeLeKeDGlIkRsrDskLCrHGpkGmCvyCSPLEPyDEs
                      +V+EDe+Dq+L+K+DG+I+RsrD++LCrHGp+G+Cv+C+PLEP+DE+
    KIAA1499   147    NVVEDEIDQYLSKQDGKIYRSRDPQLCRHGPLGKCVHCVPLEPFDED 193  

                   YLnhkEnkIKHlSFHaYlRKlnsnanKkesGksfIspLeeisfrIKegCh
                   YLnh+E+++KH+SFHaY+RKl+++a+K   Gk++  +Le+is++IK+gC 
    KIAA1499   194 YLNHLEPPVKHMSFHAYIRKLTGGADK---GKFV--ALENISCKIKSGC- 237  

                   eGHpPWPkGICsKCQPSAITLNrQefRhVDhveFenseIvdrFLnaWRkT
                   eGH+PWP+GIC+KCQPSAITLNrQ++RhVD+++Fen++++drFL++WRkT
    KIAA1499   238 EGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDFWRKT 287  

                   Gf<-*
                   G+   
    KIAA1499   288 GN    289  

PF05020.5.ls: domain 1 of 1, from 147 to 289: score 419.8, E = 3.6e-123
                   *->rViEDevDqeLeKeDGlIkRsrDskLCrHGpkGmCvyCSPLEPyDEs
                      +V+EDe+Dq+L+K+DG+I+RsrD++LCrHGp+G+Cv+C+PLEP+DE+
    KIAA1499   147    NVVEDEIDQYLSKQDGKIYRSRDPQLCRHGPLGKCVHCVPLEPFDED 193  

                   YLnhkEnkIKHlSFHaYlRKlnsnanKkesGksfIspLeeisfrIKegCh
                   YLnh+E+++KH+SFHaY+RKl+++a+K   Gk++  +Le+is++IK+gC 
    KIAA1499   194 YLNHLEPPVKHMSFHAYIRKLTGGADK---GKFV--ALENISCKIKSGC- 237  

                   eGHpPWPkGICsKCQPSAITLNrQefRhVDhveFenseIvdrFLnaWRkT
                   eGH+PWP+GIC+KCQPSAITLNrQ++RhVD+++Fen++++drFL++WRkT
    KIAA1499   238 EGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDFWRKT 287  

                   Gf<-*
                   G+   
    KIAA1499   288 GN    289  

PF05021.5.fs: domain 1 of 1, from 291 to 600: score 726.1, E = 2.1e-215
                   *->RfGylYGrytehknvPLGIkavVeAIYEPPQvgteDgleLleDadee
                      +fGylYGrytehk++PLGI+a+V+AIYEPPQ+gt+++leLleD+++e
    KIAA1499   291    HFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAE 337  

                   erLqVDaiAegLGLrRVGlIFTDlvdadsaeGtVlykRHkDsYFLSseEV
                   +   VD+iA +LGLr+VG+IFTDlv++d+++GtV+y+R+kD+YFLSseE+
    KIAA1499   338 V---VDEIAAKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEEC 384  

                   itAAelQtkHPNickySedghfgSKfVTlVisGdlsgeVhfesYQVSnqC
                   itA+++Q+kHPN c++S+dghfgSKfVT+V++G+++++Vhfe+YQVSnqC
    KIAA1499   385 ITAGDFQNKHPNMCRLSPDGHFGSKFVTAVATGGPDNQVHFEGYQVSNQC 434  

                   vaLvkadllETEippkddPeLayvkkevverehYVPDVfYkkkdkYGkev
                   +aLv++++l   +p+kd+PeL+y+k++++e+  YVPDVfYk+ dk+G+e+
    KIAA1499   435 MALVRDECL---LPCKDAPELGYAKESSSEQ--YVPDVFYKDVDKFGNEI 479  

                   keNAkPAlPVdyLLVdvtigfPktDtePdytFsvstsgplSakFpiENRd
                   +++A+P lPV+yL++d+t++fPk   +P+ytFs+s++ p    FpiENRd
    KIAA1499   480 TQLARP-LPVEYLIIDITTTFPK---DPVYTFSISQN-P----FPIENRD 520  

                   alGqlqdmaaLktylsrakssGDFnpflekiSnFHLLLyiatllilspld
                   +lG++qd+++L+tyls+++s    ++fl++iS+FHLLL+++t++++ pl+
    KIAA1499   521 VLGETQDFHSLATYLSQNTS----SVFLDTISDFHLLLFLVTNEVM-PLQ 565  

                   ewvplLleAVkardeelalkwakelQSvVsegwalLiella<-*
                   ++++lLleAV++r+eela++w++      se+wa++++l++   
    KIAA1499   566 DSISLLLEAVRTRNEELAQTWKR------SEQWATIEQLCS    600  

PF05021.5.ls: domain 1 of 1, from 291 to 600: score 728.1, E = 5.6e-216
                   *->RfGylYGrytehknvPLGIkavVeAIYEPPQvgteDgleLleDadee
                      +fGylYGrytehk++PLGI+a+V+AIYEPPQ+gt+++leLleD+++e
    KIAA1499   291    HFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAE 337  

                   erLqVDaiAegLGLrRVGlIFTDlvdadsaeGtVlykRHkDsYFLSseEV
                   +   VD+iA +LGLr+VG+IFTDlv++d+++GtV+y+R+kD+YFLSseE+
    KIAA1499   338 V---VDEIAAKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEEC 384  

                   itAAelQtkHPNickySedghfgSKfVTlVisGdlsgeVhfesYQVSnqC
                   itA+++Q+kHPN c++S+dghfgSKfVT+V++G+++++Vhfe+YQVSnqC
    KIAA1499   385 ITAGDFQNKHPNMCRLSPDGHFGSKFVTAVATGGPDNQVHFEGYQVSNQC 434  

                   vaLvkadllETEippkddPeLayvkkevverehYVPDVfYkkkdkYGkev
                   +aLv++++l   +p+kd+PeL+y+k++++e+  YVPDVfYk+ dk+G+e+
    KIAA1499   435 MALVRDECL---LPCKDAPELGYAKESSSEQ--YVPDVFYKDVDKFGNEI 479  

                   keNAkPAlPVdyLLVdvtigfPktDtePdytFsvstsgplSakFpiENRd
                   +++A+P lPV+yL++d+t++fPk   +P+ytFs+s++ p    FpiENRd
    KIAA1499   480 TQLARP-LPVEYLIIDITTTFPK---DPVYTFSISQN-P----FPIENRD 520  

                   alGqlqdmaaLktylsrakssGDFnpflekiSnFHLLLyiatllilspld
                   +lG++qd+++L+tyls+++s    ++fl++iS+FHLLL+++t++++ pl+
    KIAA1499   521 VLGETQDFHSLATYLSQNTS----SVFLDTISDFHLLLFLVTNEVM-PLQ 565  

                   ewvplLleAVkardeelalkwakelQSvVsegwalLiella<-*
                   ++++lLleAV++r+eela++w++      se+wa++++l++   
    KIAA1499   566 DSISLLLEAVRTRNEELAQTWKR------SEQWATIEQLCS    600  

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