hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05002369/chunk_1/iprscan-20080502-05002369.nocrc
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Query sequence: KIAA1513
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF03184.9.fs   DDE superfamily endonuclease             285.6    2.8e-87   1
PF03184.9.ls   DDE superfamily endonuclease             287.5    2.4e-83   1
PF09091.1.fs   Centromere binding protein B, DNA bind    74.2    2.5e-20   1
PF09091.1.ls   Centromere binding protein B, DNA bind    76.2    9.4e-20   1
PF01352.17.fs  KRAB box                                  60.0    2.4e-16   1
PF01352.17.ls  KRAB box                                  62.0    1.8e-15   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF01352.17.fs    1/1      87   127 ..     1    41 []    60.0  2.4e-16
PF01352.17.ls    1/1      87   127 ..     1    41 []    62.0  1.8e-15
PF09091.1.fs     1/1     293   357 ..     1    64 []    74.2  2.5e-20
PF09091.1.ls     1/1     293   357 ..     1    64 []    76.2  9.4e-20
PF03184.9.ls     1/1     395   607 ..     1   242 []   287.5  2.4e-83
PF03184.9.fs     1/1     395   607 ..     1   242 []   285.6  2.8e-87

Alignments of top-scoring domains:
PF01352.17.fs: domain 1 of 1, from 87 to 127: score 60.0, E = 2.4e-16
                   *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-*
                        F  Va++F+ EEWe L + Q++LYr+VM+ Ny++++Sl+   
    KIAA1513    87    ALFDEVAIYFSDEEWEVLTEQQKALYREVMRMNYETVLSLE    127  

PF01352.17.ls: domain 1 of 1, from 87 to 127: score 62.0, E = 1.8e-15
                   *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-*
                        F  Va++F+ EEWe L + Q++LYr+VM+ Ny++++Sl+   
    KIAA1513    87    ALFDEVAIYFSDEEWEVLTEQQKALYREVMRMNYETVLSLE    127  

PF09091.1.fs: domain 1 of 1, from 293 to 357: score 74.2, E = 2.5e-20
                   *->rkrkakypdlekalleWfrqqrakgipvsgeiIqekAkefarkl.gp
                        + + ++ ++ ++ e++r ++akg p+++e +q kA+e+a++++ p
    KIAA1513   293    GPKNGRFALVDQRVAEYVRYMQAKGDPITREAMQLKALEIAQEMnIP 339  

                   edfkkaSnGWLdrFkkRh<-*
                   e+ +kaS GW++r+++R+   
    KIAA1513   340 EKGFKASLGWCRRMMRRY    357  

PF09091.1.ls: domain 1 of 1, from 293 to 357: score 76.2, E = 9.4e-20
                   *->rkrkakypdlekalleWfrqqrakgipvsgeiIqekAkefarkl.gp
                        + + ++ ++ ++ e++r ++akg p+++e +q kA+e+a++++ p
    KIAA1513   293    GPKNGRFALVDQRVAEYVRYMQAKGDPITREAMQLKALEIAQEMnIP 339  

                   edfkkaSnGWLdrFkkRh<-*
                   e+ +kaS GW++r+++R+   
    KIAA1513   340 EKGFKASLGWCRRMMRRY    357  

PF03184.9.ls: domain 1 of 1, from 395 to 607: score 287.5, E = 2.4e-83
                   *->ippediFNaDETGlfwgllpngtVvgsseregrrvpgkkrgekrrlT
                      ++ +++ NaDET++++++++  +V+++++ e++ +++++++ek ++T
    KIAA1513   395    YEVAQMGNADETPICLEVPS--RVTVDNQGEKPVLVKTPGREKLKIT 439  

                   vvicaNaaGgeKLpPlvIgKgknprsfkfYflaekkikslpveYkankna
                   ++++ ++a+g+KLpP++I++g++++++kf         ++++e+++++++
    KIAA1513   440 AMLG-VLADGRKLPPYIILRGTYIPPGKF---------PSGMEIRCHRYG 479  

                   WmTseifeeWLekvFdprmkleylrpktegrkvLLlLDghgsHprtdefi
                   WmT++++++WLe+v+++r+       + ++++ +L+L+g+++H+ td++ 
    KIAA1513   480 WMTEDLMQDWLEVVWRRRTG------AVPKQRGMLILNGFRGHA-TDSV- 521  

                   RmatcelnNIillfLPahsssllQPlDqGVisslKraYRrkllkkalagi
                    ++++e++N++++++P++++s+lQ lD+ V+++l++++R+++++++lag+
    KIAA1513   522 -KNSMESMNTDMVIIPGGLTSQLQVLDVVVYKPLNDSVRAQYSNWLLAGN 570  

                   eslskeqkkskltnpqktlnlldAlewiakAWnkavkketIvsgw<-*
                     ls+       t+++k+++l  +lew+++AWn ++++e Iv+g+   
    KIAA1513   571 LALSP-------TGNAKKPPLGLFLEWVMVAWN-SISSESIVQGF    607  

PF03184.9.fs: domain 1 of 1, from 395 to 607: score 285.6, E = 2.8e-87
                   *->ippediFNaDETGlfwgllpngtVvgsseregrrvpgkkrgekrrlT
                      ++ +++ NaDET++++++++  +V+++++ e++ +++++++ek ++T
    KIAA1513   395    YEVAQMGNADETPICLEVPS--RVTVDNQGEKPVLVKTPGREKLKIT 439  

                   vvicaNaaGgeKLpPlvIgKgknprsfkfYflaekkikslpveYkankna
                   ++++ ++a+g+KLpP++I++g++++++kf         ++++e+++++++
    KIAA1513   440 AMLG-VLADGRKLPPYIILRGTYIPPGKF---------PSGMEIRCHRYG 479  

                   WmTseifeeWLekvFdprmkleylrpktegrkvLLlLDghgsHprtdefi
                   WmT++++++WLe+v+++r+       + ++++ +L+L+g+++H+ td++ 
    KIAA1513   480 WMTEDLMQDWLEVVWRRRTG------AVPKQRGMLILNGFRGHA-TDSV- 521  

                   RmatcelnNIillfLPahsssllQPlDqGVisslKraYRrkllkkalagi
                    ++++e++N++++++P++++s+lQ lD+ V+++l++++R+++++++lag+
    KIAA1513   522 -KNSMESMNTDMVIIPGGLTSQLQVLDVVVYKPLNDSVRAQYSNWLLAGN 570  

                   eslskeqkkskltnpqktlnlldAlewiakAWnkavkketIvsgw<-*
                     ls+       t+++k+++l  +lew+++AWn ++++e Iv+g+   
    KIAA1513   571 LALSP-------TGNAKKPPLGLFLEWVMVAWN-SISSESIVQGF    607  

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