hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05070901/chunk_1/iprscan-20080502-05070901.nocrc
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Query sequence: KIAA1517
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF04408.13.ls Helicase associated domain (HA2)              96.1    9.8e-26   1
PF04408.13.fs Helicase associated domain (HA2)              94.3    3.5e-25   1
PF07717.6.fs Domain of unknown function (DUF1605)          84.1    1.1e-23   1
PF07717.6.ls Domain of unknown function (DUF1605)          85.9    1.2e-22   1
PF00271.21.fs Helicase conserved C-terminal domain          50.7    3.3e-14   1
PF00271.21.ls Helicase conserved C-terminal domain          52.7    1.1e-12   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00271.21.fs   1/1     408   499 ..     1    76 []    50.7  3.3e-14
PF00271.21.ls   1/1     408   499 ..     1    76 []    52.7  1.1e-12
PF04408.13.ls   1/1     559   682 ..     1   124 []    96.1  9.8e-26
PF04408.13.fs   1/1     559   682 ..     1   124 []    94.3  3.5e-25
PF07717.6.fs   1/1     716   834 ..     1   139 []    84.1  1.1e-23
PF07717.6.ls   1/1     716   834 ..     1   139 []    85.9  1.2e-22

Alignments of top-scoring domains:
PF00271.21.fs: domain 1 of 1, from 408 to 499: score 50.7, E = 3.3e-14
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                       l+++   v++l++ l +e++ ++++   +g + ++vaT+va+++++
    KIAA1517   408    SLpLH---VLPLYSLLAPEKQAQVFKPPPEGTRLCVVATNVAETSLT 451  

                   ipdvnlVInydl..................pwnpesyiQRiGRaGRaG<-
                   ip++ +V++++  +++  ++ ++ ++ + ++ + +s  QR+GRaGR    
    KIAA1517   452 IPGIKYVVDCGKvkkryydrvtgvssfrvtWVSQASADQRAGRAGRTE   499  

                   *
                    
    KIAA1517     -   -    

PF00271.21.ls: domain 1 of 1, from 408 to 499: score 52.7, E = 1.1e-12
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                       l+++   v++l++ l +e++ ++++   +g + ++vaT+va+++++
    KIAA1517   408    SLpLH---VLPLYSLLAPEKQAQVFKPPPEGTRLCVVATNVAETSLT 451  

                   ipdvnlVInydl..................pwnpesyiQRiGRaGRaG<-
                   ip++ +V++++  +++  ++ ++ ++ + ++ + +s  QR+GRaGR    
    KIAA1517   452 IPGIKYVVDCGKvkkryydrvtgvssfrvtWVSQASADQRAGRAGRTE   499  

                   *
                    
    KIAA1517     -   -    

PF04408.13.ls: domain 1 of 1, from 559 to 682: score 96.1, E = 9.8e-26
                   *->aAlelLyeLgAlr..........Dsdge....LTsplGrlmarlPld
                      aA+elL +LgAl+++++ ++ ++ ++++ + ++T +lGr ma++P++
    KIAA1517   559    AAEELLIALGALQppqkaervkqLQENRlscpIT-ALGRTMATFPVA 604  

                   PrLgkmLvllaalfgcldealiiaaiLsvrgepfvntGvDRdaqrlpldk
                   Pr++kmL +l++++gcl++a++i+a ++v +e+f++          ++++
    KIAA1517   605 PRYAKML-ALSRQHGCLPYAITIVASMTV-RELFEE----------LDRP 642  

                   sekakrWNiSrdlarakf.e.g.rsll.ksars.r.lts.lsDhlall<-
                    + ++           ++++++ r++  k  +++ +++ +l+D+++ll  
    KIAA1517   643 AASDE--------ELTRLkSkRaRVAQmKRTWAgQgASLkLGDLMVLL   682  

                   *
                    
    KIAA1517     -   -    

PF04408.13.fs: domain 1 of 1, from 559 to 682: score 94.3, E = 3.5e-25
                   *->aAlelLyeLgAlr..........Dsdge....LTsplGrlmarlPld
                      aA+elL +LgAl+++++ ++ ++ ++++ + ++T +lGr ma++P++
    KIAA1517   559    AAEELLIALGALQppqkaervkqLQENRlscpIT-ALGRTMATFPVA 604  

                   PrLgkmLvllaalfgcldealiiaaiLsvrgepfvntGvDRdaqrlpldk
                   Pr++kmL +l++++gcl++a++i+a ++v +e+f++          ++++
    KIAA1517   605 PRYAKML-ALSRQHGCLPYAITIVASMTV-RELFEE----------LDRP 642  

                   sekakrWNiSrdlarakf.e.g.rsll.ksars.r.lts.lsDhlall<-
                    + ++           ++++++ r++  k  +++ +++ +l+D+++ll  
    KIAA1517   643 AASDE--------ELTRLkSkRaRVAQmKRTWAgQgASLkLGDLMVLL   682  

                   *
                    
    KIAA1517     -   -    

PF07717.6.fs: domain 1 of 1, from 716 to 834: score 84.1, E = 1.1e-23
                   *->sQLlrilkrlgli.........lnessgdiellrkallaGlypnvAr
                       QL   +++ +   +   +++ ++++  ++  lr++++aGl +++Ar
    KIAA1517   716    GQLTTSVNAVCPEaelfvdpkmQPPTESQVTYLRQIVTAGLGDHLAR 762  

                   r.....eedrggkgsYktlr..svrlpvrskrsgvkdgeekgkfktndgn
                   r +++++ ++   + Ykt   + +                          
    KIAA1517   763 RvqseeMLEDKWRNAYKTPLldDP-------------------------- 786  

                   VfiHPsSvLfntkkkppkwivytelvetskkgdgskvyardvtaispewl
                   VfiHPsSvLf   k  p+++vy+e+vet+k      +y++ v+ ++  w+
    KIAA1517   787 VFIHPSSVLF---KELPEFVVYQEIVETTK------MYMKGVSSVEVQWI 827  

                   lllapgki<-*
                     l p ++   
    KIAA1517   828 PALLP-SY    834  

PF07717.6.ls: domain 1 of 1, from 716 to 834: score 85.9, E = 1.2e-22
                   *->sQLlrilkrlgli.........lnessgdiellrkallaGlypnvAr
                       QL   +++ +   +   +++ ++++  ++  lr++++aGl +++Ar
    KIAA1517   716    GQLTTSVNAVCPEaelfvdpkmQPPTESQVTYLRQIVTAGLGDHLAR 762  

                   r.....eedrggkgsYktlr..svrlpvrskrsgvkdgeekgkfktndgn
                   r +++++ ++   + Ykt   + +                          
    KIAA1517   763 RvqseeMLEDKWRNAYKTPLldDP-------------------------- 786  

                   VfiHPsSvLfntkkkppkwivytelvetskkgdgskvyardvtaispewl
                   VfiHPsSvLf   k  p+++vy+e+vet+k      +y++ v+ ++  w+
    KIAA1517   787 VFIHPSSVLF---KELPEFVVYQEIVETTK------MYMKGVSSVEVQWI 827  

                   lllapgki<-*
                     l p ++   
    KIAA1517   828 PALLP-SY    834  

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