hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05070901/chunk_1/iprscan-20080502-05070901.nocrc
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Query sequence: KIAA1517
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00487                                                 102.4    5.1e-26   1
SM00490                                                  61.3    1.2e-13   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00487      1/1      74   265 ..     1   219 []   102.4  5.1e-26
SM00490      1/1     380   499 ..     1    86 []    61.3  1.2e-13

Alignments of top-scoring domains:
SM00487: domain 1 of 1, from 74 to 265: score 102.4, E = 5.1e-26
                   *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg
                      + + l++ Q  +++++ e+  vi++++TGsGKT++ +++l e++ ++
    KIAA1517    74    KLpILSEEQV-IMEAVAEHPIVIVCGETGSGKTTQVPQFLYEAGFSS 119  

                   kplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvgl
                            +  + v+ P+r++a  + ++++k++  +        +vv++
    KIAA1517   120 --------EDSIIGVTEPRRVAAVAMSQRVAKEMNLSQ-------RVVSY 154  

                   ygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkglsl.nldlvi
                     +               + t+i ++T g+Ll+++++++  +l ++++vi
    KIAA1517   155 QIRyEG---------NVTEETRIKFMTDGVLLKEIqKDF--LLlRYKVVI 193  

                   lDEaHrlldmgsggdhgfgdqle.llkrl.......pknrqrlllSATpp
                   +DEaH+++         ++d+l +ll+r+   + +++  +++l++SAT+ 
    KIAA1517   194 IDEAHERS--------VYTDILIgLLSRIvtlrakrNLPLKLLIMSATLR 235  

                   ..eienllklflnlpelfpnpvfisvgftlepieqf<-*
                    ++   + +lf + p     ++ + +    +p++++   
    KIAA1517   236 veDFTQNPRLFAKPP----PVIKVESR--QFPVTVH    265  

SM00490: domain 1 of 1, from 380 to 499: score 61.3, E = 1.2e-13
                   *->delaelLkellkd................pgikvarlHGglsqeeRe
                      de +  L + l ++ ++++++++++++ +  + v++l++ l +e++ 
    KIAA1517   380    DEEEGALDSDLDLdlgdggqdggeqpdasLPLHVLPLYSLLAPEKQA 426  

                   eilekFrkgkikvLvaTdvaerGlDipgvdlVInydl.............
                   ++++  ++g + ++vaT+vae++l+ipg+++V++++  +++  ++ ++ +
    KIAA1517   427 QVFKPPPEGTRLCVVATNVAETSLTIPGIKYVVDCGKvkkryydrvtgvs 476  

                   .....pwspasyiQRiGRaGRaG<-*
                   + + ++ s as+ QR+GRaGR     
    KIAA1517   477 sfrvtWVSQASADQRAGRAGRTE    499  

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