hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05120805/chunk_1/iprscan-20080502-05120805.nocrc
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Query sequence: KIAA1520
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF00664.13.ls ABC transporter transmembrane region       200.5    3.8e-57   1
PF00664.13.fs ABC transporter transmembrane region       200.0    5.1e-57   1
PF00005.17.ls ABC transporter                            180.8      3e-51   1
PF00005.17.fs ABC transporter                            179.0    1.1e-50   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF00664.13.fs   1/1     232   495 ..     1   278 [.   200.0  5.1e-57
PF00664.13.ls   1/1     232   503 ..     1   286 []   200.5  3.8e-57
PF00005.17.fs   1/1     576   760 ..     1   224 []   179.0  1.1e-50
PF00005.17.ls   1/1     576   760 ..     1   224 []   180.8    3e-51

Alignments of top-scoring domains:
PF00664.13.fs: domain 1 of 1, from 232 to 495: score 200.0, E = 5.1e-57
                   *->lligilllilagatalvtfplllgrfldsgfplsdgnddhearssli
                      l+++ ++li+a + + +  p+++gr +d+   +  ++  +++  + +
    KIAA1520   232    LVAASFFLIVAALGETF-LPYYTGRAIDG---IVIQKSMDQFSTAVV 274  

                   slailsllavfvlqglllqgsfyllAgerlgqrlrkrlfrallrqilglf
                   ++++l ++++ ++ g+  ++++ +  + rl++rlr++lfr+l+ q+ ++f
    KIAA1520   275 IVCLL-AIGSSFAAGIRGGIFTLI--FARLNIRLRNCLFRSLVSQETSFF 321  

                   dsffdtnsvGeltsRltnDvskirdglgdklgllfqslatvvgglivmfy
                   d+    n++G+l sRlt+D+ +++d++++++ +++++ + v g++++mf 
    KIAA1520   322 DE----NRTGDLISRLTSDTTMVSDLVSQNINVFLRNTVKVTGVVVFMFS 367  

                   yswkLtLvllailpllillsavlakklrklnrkeqkayakagsvaeEsls
                   +sw+L+Lv++  +p+++++s +++k  ++l++++q+a a a++ aeE++s
    KIAA1520   368 LSWQLSLVTFMGFPIIMMVSNIYGKYYKRLSKEVQNALARASNTAEETIS 417  

                   girTVkafgrEeyelerydkaledaekagikkaiiagllfgitqlisyls
                   +++TV++f++Ee e e y  +l+ ++k  +k a+++++   ++ l  +++
    KIAA1520   418 AMKTVRSFANEEEEAEVYLRKLQQVYKLNRKEAAAYMYYVWGSGLTLLVV 467  

                   yalalwfGgylvasvisgglsvgtlfaflsl<-*
                   ++ +l++Gg+l   visg++++g+l+af+ +   
    KIAA1520   468 QVSILYYGGHL---VISGQMTSGNLIAFIIY    495  

PF00664.13.ls: domain 1 of 1, from 232 to 503: score 200.5, E = 3.8e-57
                   *->lligilllilagatalvtfplllgrfldsgfplsdgnddhearssli
                      l+++ ++li+a + + +  p+++gr +d+   +  ++  +++  + +
    KIAA1520   232    LVAASFFLIVAALGETF-LPYYTGRAIDG---IVIQKSMDQFSTAVV 274  

                   slailsllavfvlqglllqgsfyllAgerlgqrlrkrlfrallrqilglf
                   ++++l ++++ ++ g+  ++++ +  + rl++rlr++lfr+l+ q+ ++f
    KIAA1520   275 IVCLL-AIGSSFAAGIRGGIFTLI--FARLNIRLRNCLFRSLVSQETSFF 321  

                   dsffdtnsvGeltsRltnDvskirdglgdklgllfqslatvvgglivmfy
                   d+    n++G+l sRlt+D+ +++d++++++ +++++ + v g++++mf 
    KIAA1520   322 DE----NRTGDLISRLTSDTTMVSDLVSQNINVFLRNTVKVTGVVVFMFS 367  

                   yswkLtLvllailpllillsavlakklrklnrkeqkayakagsvaeEsls
                   +sw+L+Lv++  +p+++++s +++k  ++l++++q+a a a++ aeE++s
    KIAA1520   368 LSWQLSLVTFMGFPIIMMVSNIYGKYYKRLSKEVQNALARASNTAEETIS 417  

                   girTVkafgrEeyelerydkaledaekagikkaiiagllfgitqlisyls
                   +++TV++f++Ee e e y  +l+ ++k  +k a+++++   ++ l  +++
    KIAA1520   418 AMKTVRSFANEEEEAEVYLRKLQQVYKLNRKEAAAYMYYVWGSGLTLLVV 467  

                   yalalwfGgylvasvisgglsvgtlfaflslgnqltgpl<-*
                   ++ +l++Gg+l   visg++++g+l+af+ +  +l       
    KIAA1520   468 QVSILYYGGHL---VISGQMTSGNLIAFIIYEFVLGDCM    503  

PF00005.17.fs: domain 1 of 1, from 576 to 760: score 179.0, E = 1.1e-50
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd
                      G+v+alvGp+G+GKS+  ++l  +++  +   G++lld         
    KIAA1520   576    GKVTALVGPSGSGKSSCVNILENFYP-LE--GGRVLLD--------- 610  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke
                   ++ +s+++++ l++ i+ v+Q+p lf     ++ +n+ yglp        
    KIAA1520   611 GKPISAYDHKYLHRVISLVSQEPVLF---ARSITDNISYGLPTVPFE--- 654  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   reallrllgleeeadaraeeaLervGlpdladrsnLpqgydtvlgerpgt
                                +  +a + ++  G+  ++++     gy t+ ge++++
    KIAA1520   655 -------------MVVEAAQKANAHGFIMELQD-----GYSTETGEKGAQ 686  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   LSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrgeq
                   LSGGqkQRva ARal+++p++L+LDE+T++LD++s+  ++++++   +  
    KIAA1520   687 LSGGQKQRVAMARALVRNPPVLILDEATSALDAESEYLIQQAIHGNLQ-- 734  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxx   
                   gitvllitHdldlldrladrilvlenG<-*
                     tvl+i H+l  +++ a  i+vl++G   
    KIAA1520   735 KHTVLIIAHRLSTVEH-AHLIVVLDKG    760  

PF00005.17.ls: domain 1 of 1, from 576 to 760: score 180.8, E = 3e-51
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd
                      G+v+alvGp+G+GKS+  ++l  +++  +   G++lld         
    KIAA1520   576    GKVTALVGPSGSGKSSCVNILENFYP-LE--GGRVLLD--------- 610  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke
                   ++ +s+++++ l++ i+ v+Q+p lf     ++ +n+ yglp        
    KIAA1520   611 GKPISAYDHKYLHRVISLVSQEPVLF---ARSITDNISYGLPTVPFE--- 654  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   reallrllgleeeadaraeeaLervGlpdladrsnLpqgydtvlgerpgt
                                +  +a + ++  G+  ++++     gy t+ ge++++
    KIAA1520   655 -------------MVVEAAQKANAHGFIMELQD-----GYSTETGEKGAQ 686  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   LSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrgeq
                   LSGGqkQRva ARal+++p++L+LDE+T++LD++s+  ++++++   +  
    KIAA1520   687 LSGGQKQRVAMARALVRNPPVLILDEATSALDAESEYLIQQAIHGNLQ-- 734  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxx   
                   gitvllitHdldlldrladrilvlenG<-*
                     tvl+i H+l  +++ a  i+vl++G   
    KIAA1520   735 KHTVLIIAHRLSTVEH-AHLIVVLDKG    760  

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