hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05135068/chunk_1/iprscan-20080502-05135068.nocrc
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Query sequence: KIAA1521
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02204.8.fs Vacuolar sorting protein 9 (VPS9) domain       192.8    4.6e-59   1
PF02204.8.ls Vacuolar sorting protein 9 (VPS9) domain       194.6    2.1e-55   1
PF00616.9.ls GTPase-activator protein for Ras-like GTPase   140.3    4.7e-39   1
PF00616.9.fs GTPase-activator protein for Ras-like GTPase   138.4    1.8e-38   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00616.9.fs   1/1     158   359 ..     1   200 []   138.4  1.8e-38
PF00616.9.ls   1/1     158   359 ..     1   200 []   140.3  4.7e-39
PF02204.8.fs   1/1    1380  1482 ..     1   120 []   192.8  4.6e-59
PF02204.8.ls   1/1    1380  1482 ..     1   120 []   194.6  2.1e-55

Alignments of top-scoring domains:
PF00616.9.fs: domain 1 of 1, from 158 to 359: score 138.4, E = 1.8e-38
                   *->llsqlieeEieektsdpntlFR.gNslatkllsaYlrr..vgqeYLk
                      +l++lie E++e +++p+ l+R+g + ++ l++ + +   +++ +L 
    KIAA1521   158    VLRYLIEFELKE-SDNPRRLLRrGTCAFSILFKLFSEGlfSAKLFLT 203  

                   dtL.gplireiveskedlslElDPssklydgeineee.qtg.ps.lp...
                   +tL+ p+++ +ve++++l  E+DP  kl + +++ ++++ ++++++++ +
    KIAA1521   204 ATLhEPIMQLLVEDEDHL--ETDP-NKLIERFSPSQQeKLFgEKgSDrfr 250  

                   ......leknlenLreycekfldaIisSvdklPpelryickqire..sve
                   ++ ++ +e+n ++L+++++kf+  + +++ ++P++lr+i +q +++ s+ 
    KIAA1521   251 qkvqemVESNEAKLVALVNKFIGYLKQNTYCFPHSLRWIVSQMYKtlSCV 300  

                   kkf.pdakqdeaerlsavggflFLRFlfcPAivsPelfglveamvtssed
                   ++ + ++        +a  + l L +++cPA+v+Pe++g++      s+ 
    KIAA1521   301 DRLeVGE-------VRAMCTDLLLACFICPAVVNPEQYGII------SDA 337  

                   hpsprarRnLtliaKvLQnlan<-*
                   +++++ar nL+++ ++LQ+la    
    KIAA1521   338 PINEVARFNLMQVGRLLQQLAM    359  

PF00616.9.ls: domain 1 of 1, from 158 to 359: score 140.3, E = 4.7e-39
                   *->llsqlieeEieektsdpntlFR.gNslatkllsaYlrr..vgqeYLk
                      +l++lie E++e +++p+ l+R+g + ++ l++ + +   +++ +L 
    KIAA1521   158    VLRYLIEFELKE-SDNPRRLLRrGTCAFSILFKLFSEGlfSAKLFLT 203  

                   dtL.gplireiveskedlslElDPssklydgeineee.qtg.ps.lp...
                   +tL+ p+++ +ve++++l  E+DP  kl + +++ ++++ ++++++++ +
    KIAA1521   204 ATLhEPIMQLLVEDEDHL--ETDP-NKLIERFSPSQQeKLFgEKgSDrfr 250  

                   ......leknlenLreycekfldaIisSvdklPpelryickqire..sve
                   ++ ++ +e+n ++L+++++kf+  + +++ ++P++lr+i +q +++ s+ 
    KIAA1521   251 qkvqemVESNEAKLVALVNKFIGYLKQNTYCFPHSLRWIVSQMYKtlSCV 300  

                   kkf.pdakqdeaerlsavggflFLRFlfcPAivsPelfglveamvtssed
                   ++ + ++        +a  + l L +++cPA+v+Pe++g++      s+ 
    KIAA1521   301 DRLeVGE-------VRAMCTDLLLACFICPAVVNPEQYGII------SDA 337  

                   hpsprarRnLtliaKvLQnlan<-*
                   +++++ar nL+++ ++LQ+la    
    KIAA1521   338 PINEVARFNLMQVGRLLQQLAM    359  

PF02204.8.fs: domain 1 of 1, from 1380 to 1482: score 192.8, E = 4.6e-59
                   *->veeakqeLrelqYeyySPrdKlqcllrccklIfnalknakgeneaPT
                      +++a++e+r+++ +y++PrdK+qc+lr+c++I+n+l++a++++    
    KIAA1521  1380    WPSAQSEIRTIS-AYKTPRDKVQCILRMCSTIMNLLSLANEDS---- 1421 

                   DPmCGYRGepsADdfLPlLiYvilkanpphLlsnieYisrFlnpPisrlL
                           +p+ADdf+P+L++v++kanpp+Lls+++Yis+F++   s +L
    KIAA1521  1422 --------VPGADDFVPVLVFVLIKANPPCLLSTVQYISSFYA---S-CL 1459 

                   sGEegYYLTsLeaAlaFIkslde<-*
                   sGEe+Y++++++aA++FIk++d+   
    KIAA1521  1460 SGEESYWWMQFTAAVEFIKTIDD    1482 

PF02204.8.ls: domain 1 of 1, from 1380 to 1482: score 194.6, E = 2.1e-55
                   *->veeakqeLrelqYeyySPrdKlqcllrccklIfnalknakgeneaPT
                      +++a++e+r+++ +y++PrdK+qc+lr+c++I+n+l++a++++    
    KIAA1521  1380    WPSAQSEIRTIS-AYKTPRDKVQCILRMCSTIMNLLSLANEDS---- 1421 

                   DPmCGYRGepsADdfLPlLiYvilkanpphLlsnieYisrFlnpPisrlL
                           +p+ADdf+P+L++v++kanpp+Lls+++Yis+F++   s +L
    KIAA1521  1422 --------VPGADDFVPVLVFVLIKANPPCLLSTVQYISSFYA---S-CL 1459 

                   sGEegYYLTsLeaAlaFIkslde<-*
                   sGEe+Y++++++aA++FIk++d+   
    KIAA1521  1460 SGEESYWWMQFTAAVEFIKTIDD    1482 

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