# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh03104mrp1.fasta.huge -Q ../query/KIAA1528.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1528, 740 aa
 vs ./tmplib.25089 library

1986765 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 9.4879+/-0.00915; mu= -5.1556+/- 0.617
 mean_var=367.9414+/-90.905, 0's: 0 Z-trim: 2  B-trim: 5 in 1/39
 Lambda= 0.066863

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0937  ( 653 res)   hh04715                     ( 653) 1344 143.9 4.6e-35


>>KIAA0937  ( 653 res)   hh04715                          (653 aa)
 initn: 1767 init1: 984 opt: 1344  Z-score: 721.3  bits: 143.9 E(): 4.6e-35
Smith-Waterman score: 1791;  45.778% identity (66.370% similar) in 675 aa overlap (95-740:2-651)

           70        80        90       100       110       120    
KIAA15 KSFLLRSWCLHPEGTVCASSPERKDLPEALGNDPGTPGQRGLKLFGKAAGLLGKMAMAPS
                                     :  : . .:.  .  :.. :   . :.  :
KIAA09                              RGRGPEAAAQEEAEEVGRS-GPGRRAAQRRS
                                            10         20        30

          130       140       150       160       170       180    
KIAA15 PSLVQVYTSPAAVAVWEWQDGLGTWHPYSATVCSFIEQQFVQQKGQRFGLGSLAHSIPLG
       :.:... .:  ::.:::: .  : :.::: .:   ::   : . : : : :    :. ::
KIAA09 PGLAMLLAS--AVVVWEWLNEHGRWRPYSPAVSHHIEA--VVRAGPRAG-G----SVVLG
                 40        50        60          70             80 

          190       200       210       220       230       240    
KIAA15 QADPSLAPYIIDLPSWTQFRQDTGTMRAVRRHLFPQHSAPGRGVVWEWLSDDGSWTAYEA
       :.:  :::::::: : .::::::::.: :::. .   ::::.:::::: .:.:::: :. 
KIAA09 QVDSRLAPYIIDLQSMNQFRQDTGTLRPVRRNYYDPSSAPGKGVVWEWENDNGSWTPYDM
              90       100       110       120       130       140 

          250       260       270       280       290       300    
KIAA15 SVCDYLEQQVARGNQLVDLAPLGYNYTVNYTTHTQTNKTSSFCRSVRRQAGPPYPVTTII
        :   ...   . .  .::. .:..:.....:  : :. ..  : :::.    ::..:  
KIAA09 EVGITIQHAYEKQHPWIDLTSIGFSYVIDFNTMGQINRQTQRQRRVRRRLDLIYPMVTGT
             150       160       170       180       190       200 

               310              320                  330       340 
KIAA15 AP-----PGHTGVA-------CSCHQCL----------SGSRTGPVS-GRYRHSMTNLPA
        :     :   : :       ::: ::.          .:: :::..    :..:    .
KIAA09 LPKAQSWPVSPGPATSPPMSPCSCPQCVLVMSVKAAVVNGS-TGPLQLPVTRKNMPPPGV
             210       220       230       240        250       260

             350       360        370       380         390        
KIAA15 YPVPQHPPHRTASVFGTHQAFAPYNK-PSLSGARSAPRLNTTNAWG--AAPPSLGSQPLY
         .:  :   .  . .:    .: .  ::    :.:  . : .. :  :.::. .:.   
KIAA09 VKLPPLPGSGAKPLDSTGTIRGPLKTAPSQVIRRQASSMPTGTTMGSPASPPGPNSKT-G
              270       280       290       300       310          

      400       410       420       430       440        450       
KIAA15 RSSLSHLGPQHLPPGSSTSGAVSASLPSGPSSSPGSVPATVPMQ-MPKPSRVQQALAGMT
       : .:. :.  .:   . ... :   . ::       :: :::.. .   : :. ::::.:
KIAA09 RVALATLNRTNLQRLAIAQSRV--LIASG-------VP-TVPVKNLNGSSPVNPALAGIT
     320       330       340                 350       360         

       460       470         480       490       500       510     
KIAA15 SVLMSAIGLPVCLSRAPQPT--SPPASRLASKSHGSVKRLRKMSVKEATPKPEPEPEQVI
       ..:::: ::::::.: :. .   ::.:.   ::  .:.   . ..:. . : .  ::.:.
KIAA09 GILMSAAGLPVCLTRPPKLVLHPPPVSKSEIKSIPGVSNTSRKTTKKQAKKGKT-PEEVL
     370       380       390       400       410       420         

         520       530       540       550       560       570     
KIAA15 KNYTEELKVPPDEDCIICMEKLSAASGYSDVTDSKAIGSLAVGHLTKCSHAFHLLCLLAM
       :.: .... :::::: ::::.:.: :::.    . ..    ::.:..:.:..:. ::.::
KIAA09 KKYLQKVRHPPDEDCTICMERLTAPSGYKG--PQPTVKPDLVGKLSRCGHVYHIYCLVAM
      430       440       450         460       470       480      

         580       590       600       610       620       630     
KIAA15 YCNGNKDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSIPHGIQ
       : :::::::::::.:::::: :::::: ::::   .  ::::: :: :: :.:::: :::
KIAA09 YNNGNKDGSLQCPTCKTIYGVKTGTQPPGKMEYHLIPHSLPGHPDCKTIRIIYSIPPGIQ
        490       500       510       520       530       540      

         640       650       660       670       680       690     
KIAA15 GPEHPNPGKPFTARGFPRQCYLPDNAQGRKVLELLKVAWKRRLIFTVGTSSTTGETDTVV
       ::::::::: :.::::::.:::::. .:::::.:: ::: :::::..::::::::.:::.
KIAA09 GPEHPNPGKSFSARGFPRHCYLPDSEKGRKVLKLLLVAWDRRLIFAIGTSSTTGESDTVI
        550       560       570       580       590       600      

         700       710       720       730       740  
KIAA15 WNEIHHKTEMDRNITGHGYPDPNYLQNVLAELAAQGVTEDCLEQQ  
       :::.:::::.  :.::::::: :::.::::::::::..::   :.  
KIAA09 WNEVHHKTEFGSNLTGHGYPDANYLDNVLAELAAQGISEDSTAQEKD
        610       620       630       640       650   




740 residues in 1 query   sequences
1986765 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:06:53 2008 done: Thu Dec 18 15:06:53 2008
 Total Scan time:  0.570 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]