hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05302213/chunk_1/iprscan-20080502-05302213.nocrc
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Query sequence: KIAA1531
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00369                                                  69.0    5.9e-16   4
SM00082                                                  36.1    4.7e-06   1
SM00409                                                  26.4     0.0039   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00369     1/4     167   191 ..     1    24 []     5.9       78
SM00369     2/4     192   215 ..     1    24 []    21.2     0.14
SM00369     3/4     216   239 ..     1    24 []    27.8   0.0015
SM00369     4/4     240   263 ..     1    24 []    14.0        8
SM00082     1/1     275   325 ..     1    55 []    36.1  4.7e-06
SM00409     1/1     338   431 ..     1    58 []    26.4   0.0039

Alignments of top-scoring domains:
SM00369: domain 1 of 4, from 167 to 191: score 5.9, E = 78
                   *->LpnL.reLdLsnNqLtsLPpgaFqg<-*
                      Lpn + +L LsnN++t L +g F g   
    KIAA1531   167    LPNGtVTLLLSNNKITGLRNGSFLG    191  

SM00369: domain 2 of 4, from 192 to 215: score 21.2, E = 0.14
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L+ L++LdL nN ++++ pgaF g   
    KIAA1531   192    LSLLEKLDLRNNIISTVQPGAFLG    215  

SM00369: domain 3 of 4, from 216 to 239: score 27.8, E = 0.0015
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++L++LdLsnN++  L +++Fqg   
    KIAA1531   216    LGELKRLDLSNNRIGCLTSETFQG    239  

SM00369: domain 4 of 4, from 240 to 263: score 14.0, E = 8
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      Lp L +L+ s+N ++sL pg+F+    
    KIAA1531   240    LPRLLRLNISGNIFSSLQPGVFDE    263  

SM00082: domain 1 of 1, from 275 to 325: score 36.1, E = 4.7e-06
                   *->NPfnCDCeLrwLlrwleaqnnealqdpvsslrCasPeslrGqpllll
                        + CDC+LrwLl+w ++   + lq ++ +++Ca+P++l+  + l +
    KIAA1531   275    EFLTCDCHLRWLLPWAQN---RSLQLSE-HTLCAYPSALHA-QALGS 316  

                   lp.sefsCp<-*
                   l ++   C+   
    KIAA1531   317 LQeAQLCCE    325  

SM00409: domain 1 of 1, from 338 to 431: score 26.4, E = 0.0039
                   *->pp.vtvkeGesvtLtC.as......titWy.................
                      + +++v  G+++ ++C+as  +++++i+Wy+++ +  ++ + +    
    KIAA1531   338    SLrQVVFQGDRLPFQCsASylgndtRIRWYhnrapvegdeqagilla 384  

                   .............LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLt
                    +  ++ +  ++ Lt++++ +  s   G+  C+++   g+as+   +++ 
    KIAA1531   385 eslihdctfitseLTLsHIGVWAS---GEWECTVSmaQGNASK--KVEIV 429  

                   Vl<-*
                   Vl   
    KIAA1531   430 VL    431  

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