hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05365944/chunk_1/iprscan-20080502-05365944.nocrc
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Query sequence: KIAA1535
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF08412.1.fs Ion transport protein N-terminal           150.5    1.3e-45   1
PF08412.1.ls Ion transport protein N-terminal           134.6    2.5e-37   1
PF00027.19.fs Cyclic nucleotide-binding domain            84.0    1.4e-23   1
PF00027.19.ls Cyclic nucleotide-binding domain            85.8    1.2e-22   1
PF00520.21.fs Ion transport protein                       81.1    2.6e-22   1
PF00520.21.ls Ion transport protein                       83.0    8.7e-22   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF08412.1.ls   1/1       1    61 [.     1    77 []   134.6  2.5e-37
PF08412.1.fs   1/1       2    61 ..    18    77 .]   150.5  1.3e-45
PF00520.21.ls   1/1      65   283 ..     1   224 []    83.0  8.7e-22
PF00520.21.fs   1/1      65   283 ..     1   224 []    81.1  2.6e-22
PF00027.19.fs   1/1     383   468 ..     1    98 []    84.0  1.4e-23
PF00027.19.ls   1/1     383   468 ..     1    98 []    85.8  1.2e-22

Alignments of top-scoring domains:
PF08412.1.ls: domain 1 of 1, from 1 to 61: score 134.6, E = 2.5e-37
                   *->QLqAlLQPsdNkLSmkLFGSkKAlekEkiRlkkAGfwiIHPcSdFRF
                                       FGS KA+e E++R+k+AG wiIHP+SdFRF
    KIAA1535     1    ----------------VFGSHKAVEIEQERVKSAGAWIIHPYSDFRF 31   

                   YWDLlMLLLlvANlIiLPVaItFFkdedst<-*
                   YWDL+MLLL+v+NlI+LPV+ItFFk+e+s    
    KIAA1535    32 YWDLIMLLLMVGNLIVLPVGITFFKEENSP    61   

PF08412.1.fs: domain 1 of 1, from 2 to 61: score 150.5, E = 1.3e-45
                   *->FGSkKAlekEkiRlkkAGfwiIHPcSdFRFYWDLlMLLLlvANlIiL
                      FGS KA+e E++R+k+AG wiIHP+SdFRFYWDL+MLLL+v+NlI+L
    KIAA1535     2    FGSHKAVEIEQERVKSAGAWIIHPYSDFRFYWDLIMLLLMVGNLIVL 48   

                   PVaItFFkdedst<-*
                   PV+ItFFk+e+s    
    KIAA1535    49 PVGITFFKEENSP    61   

PF00520.21.ls: domain 1 of 1, from 65 to 283: score 83.0, E = 8.7e-22
                   *->ildyvftviFtlEmllkiialgfklhsr.........iafkYlrspw
                      +++++ +++F+l+ +l+++ +g+++++  +    ++ i+ +Ylr+++
    KIAA1535    65    VFNVLSDTFFLLDLVLNFR-TGIVVEEGaeillapraIRTRYLRTWF 110  

                   NilDflvvlpslislilsllgggsegdlyvres.k.dstlse.gspglls
                     +D+++ +p +  +++++l+           ++++   +++    ++++
    KIAA1535   111 L-VDLISSIPVDYIFLVVELE-----------PrLdAEVYKTaRALRIVR 148  

                   vlrllRllRvLRllrlirrapglfRWe.lrtlWelnslgrslksllnvll
                   + ++l llR+LRl rlir+++    We++ ++     l  ++ +++n++ 
    KIAA1535   149 FTKILSLLRLLRLSRLIRYIHQ---WEeIFHM--TYDLASAVVRIFNLIG 193  

                   llllllfiFaiigvqlFggklnkcc.....npingntnFdsfgnaflwlF
                   ++lll+++ +++ +++ +  +++ +++ + n  +++++ + + +a++ ++
    KIAA1535   194 MMLLLCHWDGCLQFLVPMLQDFPPDcwvsiNHMVNHSWGRQYSHALFKAM 243  

                   qtmTteGwgdvmpdtlagtvlgyiyfvsfiilgsflllNLfiavi<-*
                     m  +G+g+  p+    ++  + + ++ +i+g+    ++fi+     
    KIAA1535   244 SHMLCIGYGQQAPV----GMPDVWLTMLSMIVGA-TCYAMFIGHA    283  

PF00520.21.fs: domain 1 of 1, from 65 to 283: score 81.1, E = 2.6e-22
                   *->ildyvftviFtlEmllkiialgfklhsr.........iafkYlrspw
                      +++++ +++F+l+ +l+++ +g+++++  +    ++ i+ +Ylr+++
    KIAA1535    65    VFNVLSDTFFLLDLVLNFR-TGIVVEEGaeillapraIRTRYLRTWF 110  

                   NilDflvvlpslislilsllgggsegdlyvres.k.dstlse.gspglls
                     +D+++ +p +  +++++l+           ++++   +++    ++++
    KIAA1535   111 L-VDLISSIPVDYIFLVVELE-----------PrLdAEVYKTaRALRIVR 148  

                   vlrllRllRvLRllrlirrapglfRWe.lrtlWelnslgrslksllnvll
                   + ++l llR+LRl rlir+++    We++ ++     l  ++ +++n++ 
    KIAA1535   149 FTKILSLLRLLRLSRLIRYIHQ---WEeIFHM--TYDLASAVVRIFNLIG 193  

                   llllllfiFaiigvqlFggklnkcc.....npingntnFdsfgnaflwlF
                   ++lll+++ +++ +++ +  +++ +++ + n  +++++ + + +a++ ++
    KIAA1535   194 MMLLLCHWDGCLQFLVPMLQDFPPDcwvsiNHMVNHSWGRQYSHALFKAM 243  

                   qtmTteGwgdvmpdtlagtvlgyiyfvsfiilgsflllNLfiavi<-*
                     m  +G+g+  p+    ++  + + ++ +i+g+    ++fi+     
    KIAA1535   244 SHMLCIGYGQQAPV----GMPDVWLTMLSMIVGA-TCYAMFIGHA    283  

PF00027.19.fs: domain 1 of 1, from 383 to 468: score 84.0, E = 1.4e-23
                   *->lrsfkkGevifreGdpadslYivlsGkvkvyk.dedgreqilgilgp
                      ++ f++G+ ++reG  ++++Y++++G ++v  ++         +l+ 
    KIAA1535   383    FEVFQPGDLVVREGSVGRKMYFIQHGLLSVLArGARDT-----RLTD 424  

                   GdffGelallggendspSrhaprsatvvAltdsellvipredflelleed
                   G++fGe++ll+          +r+a+v+A t ++l++++ ++f+++lee+
    KIAA1535   425 GSYFGEICLLTRG--------RRTASVRADTYCRLYSLSVDHFNAVLEEF 466  

                   pe<-*
                   p    
    KIAA1535   467 PM    468  

PF00027.19.ls: domain 1 of 1, from 383 to 468: score 85.8, E = 1.2e-22
                   *->lrsfkkGevifreGdpadslYivlsGkvkvyk.dedgreqilgilgp
                      ++ f++G+ ++reG  ++++Y++++G ++v  ++         +l+ 
    KIAA1535   383    FEVFQPGDLVVREGSVGRKMYFIQHGLLSVLArGARDT-----RLTD 424  

                   GdffGelallggendspSrhaprsatvvAltdsellvipredflelleed
                   G++fGe++ll+          +r+a+v+A t ++l++++ ++f+++lee+
    KIAA1535   425 GSYFGEICLLTRG--------RRTASVRADTYCRLYSLSVDHFNAVLEEF 466  

                   pe<-*
                   p    
    KIAA1535   467 PM    468  

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