hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-05384138/chunk_1/iprscan-20080502-05384138.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1536 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07888.2.ls Calcium binding and coiled-coil domain (CALC 1408.9 0 1 PF07888.2.fs Calcium binding and coiled-coil domain (CALC 1407.2 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07888.2.fs 1/1 21 608 .. 1 617 [] 1407.2 0 PF07888.2.ls 1/1 21 608 .. 1 617 [] 1408.9 0 Alignments of top-scoring domains: PF07888.2.fs: domain 1 of 1, from 21 to 608: score 1407.2, E = 0 *->meekrgVsFlnVAvtYvpnTkVeChYTIpsghksSsRDWIGiFKVnt +++++gV+FlnVA+tY+pnTkVeChYT+p+g+++S++DWIGiFKV++ KIAA1536 21 APSRGGVNFLNVARTYIPNTKVECHYTLPPGTMPSASDWIGIFKVEA 67 ltvrDYeTFvWAlaPEgaqegsdahCSVqFqasYLPiPGvqeYqFvYVDq ++vrDY+TFvW+++PE++++gs++h+SVqFqasYLP+PG+q+YqF+YV++ KIAA1536 68 ACVRDYHTFVWSSVPESTTDGSPIHTSVQFQASYLPKPGAQLYQFRYVNR 117 rGdVcgiSesFvFaePrPldELVTLEdSGEGeddGdDlLLvVPKAtiLQN +G+Vcg+S++F+F+ePrP+dELVTLE+ +d+G+D+LLvVPKAt+LQN KIAA1536 118 QGQVCGQSPPFQFREPRPMDELVTLEE----ADGGSDILLVVPKATVLQN 163 qLEgaQkErndLmkkrlalegdVENERQRWKTDRDEFEILRsdkrsrIeq qL+++Q+ErndLm+++l+leg+V +++rsr+++ KIAA1536 164 QLDESQQERNDLMQLKLQLEGQV------------------TELRSRVQE 195 LeaaLriSekkteeLkeqhkelqsseesakaErNlLlaqrAEnreRIleL Le+aL++++++++eL+eq+k++++s++++++Er++L++q++++++RIleL KIAA1536 196 LERALATARQEHTELMEQYKGISRSHGEITEERDILSRQQGDHVARILEL 245 EqdiqtltkkkltkeveldrlrdtvkaltqEndrvLegtqdIkaelErek E+diqt+++k+ltkeveldrlrdtvkalt+E++++L+++++++a++E+++ KIAA1536 246 EDDIQTISEKVLTKEVELDRLRDTVKALTREQEKLLGQLKEVQADKEQSE 295 gELkvaqqenhhlnldlkeaksWqeeqsaqaqRlkettvqirDeeterid +EL+vaqqenhhlnldlkeaksWqeeqsaqaqRlk++++q++D+++++++ KIAA1536 296 AELQVAQQENHHLNLDLKEAKSWQEEQSAQAQRLKDKVAQMKDTLGQAQQ 345 lqLevesLredLRtlQerLesSqqkallLgeeLaslsSlrdhtiaeLHks +++e+e+L+e+LR++Qe+++sSqqka+lLgeeLas++++rd+tiaeLH+s KIAA1536 346 RVAELEPLKEQLRGAQELAASSQQKATLLGEELASAAAARDRTIAELHRS 395 RLesAdlslklSdlslkLkEGqsqWaqEreaLrqSaEadkDrivkLsaEl RLe+A+++++l++l+l+LkE+++qW++Er++L+qS+Ea+kD+i+kLsaE+ KIAA1536 396 RLEVAEVNGRLAELGLHLKEEKCQWSKERAGLLQSVEAEKDKILKLSAEI 445 lkleesLQEERSqRqkLeveLgqEkDarrVQLSEnrRELsELrsaLrvlQ l+le+++QEER+q+q++++eL++EkD+++VQLSE++REL+ELrsaLrvlQ KIAA1536 446 LRLEKAVQEERTQNQVFKTELAREKDSSLVQLSESKRELTELRSALRVLQ 495 kEkEQlqeEkQELldyvrrLElRLDklaDeKWkEdaaTPlcedkksslhr kEkEQlqeEkQELl+y+r+LE+RL+k+aDeKW+Eda+ +ed+++++++ KIAA1536 496 KEKEQLQEEKQELLEYMRKLEARLEKVADEKWNEDAT---TEDEEAAVGL 542 alsvDlldSdDEsPldEsVSseLspsaLDeedlsestpknPkenedlvVi +++++l+dS+DEsP+d ++L+p++L+e+++++s+p++P+e+++lvVi KIAA1536 543 SCPAALTDSEDESPED----MRLPPYGLCERGDPGSSPAGPREASPLVVI 588 qqpapiaPflsGlaednlse<-* +qpapi+P+lsG+aed++s+ KIAA1536 589 SQPAPISPHLSGPAEDSSSD 608 PF07888.2.ls: domain 1 of 1, from 21 to 608: score 1408.9, E = 0 *->meekrgVsFlnVAvtYvpnTkVeChYTIpsghksSsRDWIGiFKVnt +++++gV+FlnVA+tY+pnTkVeChYT+p+g+++S++DWIGiFKV++ KIAA1536 21 APSRGGVNFLNVARTYIPNTKVECHYTLPPGTMPSASDWIGIFKVEA 67 ltvrDYeTFvWAlaPEgaqegsdahCSVqFqasYLPiPGvqeYqFvYVDq ++vrDY+TFvW+++PE++++gs++h+SVqFqasYLP+PG+q+YqF+YV++ KIAA1536 68 ACVRDYHTFVWSSVPESTTDGSPIHTSVQFQASYLPKPGAQLYQFRYVNR 117 rGdVcgiSesFvFaePrPldELVTLEdSGEGeddGdDlLLvVPKAtiLQN +G+Vcg+S++F+F+ePrP+dELVTLE+ +d+G+D+LLvVPKAt+LQN KIAA1536 118 QGQVCGQSPPFQFREPRPMDELVTLEE----ADGGSDILLVVPKATVLQN 163 qLEgaQkErndLmkkrlalegdVENERQRWKTDRDEFEILRsdkrsrIeq qL+++Q+ErndLm+++l+leg+V +++rsr+++ KIAA1536 164 QLDESQQERNDLMQLKLQLEGQV------------------TELRSRVQE 195 LeaaLriSekkteeLkeqhkelqsseesakaErNlLlaqrAEnreRIleL Le+aL++++++++eL+eq+k++++s++++++Er++L++q++++++RIleL KIAA1536 196 LERALATARQEHTELMEQYKGISRSHGEITEERDILSRQQGDHVARILEL 245 EqdiqtltkkkltkeveldrlrdtvkaltqEndrvLegtqdIkaelErek E+diqt+++k+ltkeveldrlrdtvkalt+E++++L+++++++a++E+++ KIAA1536 246 EDDIQTISEKVLTKEVELDRLRDTVKALTREQEKLLGQLKEVQADKEQSE 295 gELkvaqqenhhlnldlkeaksWqeeqsaqaqRlkettvqirDeeterid +EL+vaqqenhhlnldlkeaksWqeeqsaqaqRlk++++q++D+++++++ KIAA1536 296 AELQVAQQENHHLNLDLKEAKSWQEEQSAQAQRLKDKVAQMKDTLGQAQQ 345 lqLevesLredLRtlQerLesSqqkallLgeeLaslsSlrdhtiaeLHks +++e+e+L+e+LR++Qe+++sSqqka+lLgeeLas++++rd+tiaeLH+s KIAA1536 346 RVAELEPLKEQLRGAQELAASSQQKATLLGEELASAAAARDRTIAELHRS 395 RLesAdlslklSdlslkLkEGqsqWaqEreaLrqSaEadkDrivkLsaEl RLe+A+++++l++l+l+LkE+++qW++Er++L+qS+Ea+kD+i+kLsaE+ KIAA1536 396 RLEVAEVNGRLAELGLHLKEEKCQWSKERAGLLQSVEAEKDKILKLSAEI 445 lkleesLQEERSqRqkLeveLgqEkDarrVQLSEnrRELsELrsaLrvlQ l+le+++QEER+q+q++++eL++EkD+++VQLSE++REL+ELrsaLrvlQ KIAA1536 446 LRLEKAVQEERTQNQVFKTELAREKDSSLVQLSESKRELTELRSALRVLQ 495 kEkEQlqeEkQELldyvrrLElRLDklaDeKWkEdaaTPlcedkksslhr kEkEQlqeEkQELl+y+r+LE+RL+k+aDeKW+Eda+ +ed+++++++ KIAA1536 496 KEKEQLQEEKQELLEYMRKLEARLEKVADEKWNEDAT---TEDEEAAVGL 542 alsvDlldSdDEsPldEsVSseLspsaLDeedlsestpknPkenedlvVi +++++l+dS+DEsP+d ++L+p++L+e+++++s+p++P+e+++lvVi KIAA1536 543 SCPAALTDSEDESPED----MRLPPYGLCERGDPGSSPAGPREASPLVVI 588 qqpapiaPflsGlaednlse<-* +qpapi+P+lsG+aed++s+ KIAA1536 589 SQPAPISPHLSGPAEDSSSD 608 //