hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-05515790/chunk_1/iprscan-20080502-05515790.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1544 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02138.8.ls Beige/BEACH domain 706.5 1.8e-209 1 PF02138.8.fs Beige/BEACH domain 704.6 6.5e-209 1 PF06469.2.ls Domain of Unknown Function (DUF1088) 446.5 3.3e-131 1 PF06469.2.fs Domain of Unknown Function (DUF1088) 444.7 1.1e-130 1 PF00400.22.ls WD domain, G-beta repeat 71.7 2.2e-18 5 PF00400.22.fs WD domain, G-beta repeat 61.8 1.9e-16 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF06469.2.fs 1/1 48 215 .. 1 201 [] 444.7 1.1e-130 PF06469.2.ls 1/1 48 215 .. 1 201 [] 446.5 3.3e-131 PF02138.8.ls 1/1 368 645 .. 1 287 [] 706.5 1.8e-209 PF02138.8.fs 1/1 368 645 .. 1 287 [] 704.6 6.5e-209 PF00400.22.fs 2/5 792 834 .. 1 38 [] 27.2 1.1e-06 PF00400.22.ls 2/5 792 834 .. 1 38 [] 29.1 1.4e-05 PF00400.22.fs 5/5 976 1014 .. 1 38 [] 13.0 0.011 Alignments of top-scoring domains: PF06469.2.fs: domain 1 of 1, from 48 to 215: score 444.7, E = 1.1e-130 *->EGRLlaHAmkDHvvRVANEAeFILNRlRAEDVsKHAeFEsecaqqlA EGRLl+HAmkDH+vRVANEAeFILNR+RAEDV+KHAeFEs+caq++A KIAA1544 48 EGRLLCHAMKDHIVRVANEAEFILNRQRAEDVHKHAEFESQCAQYAA 94 dRrEEekmCDhLIaaarlRDsvnAtrLleKisnILsdkhgawggtshsss dRrEEekmCDhLI+aa++RD+v+A++L++Ki+nIL++khgawg++shs KIAA1544 95 DRREEEKMCDHLISAAKHRDHVTANQLKQKILNILTNKHGAWGAVSHS-- 142 ggaivgavqllqFWkLDvWEDDsRRRkRFVrNAyGSrHeEAnLkeavenv ql++FW+LD+WEDD+RRR+RFVrNA+GS+H+EA+Lk+a+e+ KIAA1544 143 --------QLHDFWRLDYWEDDLRRRRRFVRNAFGSTHAEALLKAAIEY- 183 cifklrEepeiseeekirKvkkglfSqrqnssnhpsgqhngellgehELv ++ee+++K+kk ++Sq+++++n e+EL+ KIAA1544 184 -----------GTEEDVVKSKKTFRSQAIVNQN-----------AETELM 211 lEsD<-* lE+D KIAA1544 212 LEGD 215 PF06469.2.ls: domain 1 of 1, from 48 to 215: score 446.5, E = 3.3e-131 *->EGRLlaHAmkDHvvRVANEAeFILNRlRAEDVsKHAeFEsecaqqlA EGRLl+HAmkDH+vRVANEAeFILNR+RAEDV+KHAeFEs+caq++A KIAA1544 48 EGRLLCHAMKDHIVRVANEAEFILNRQRAEDVHKHAEFESQCAQYAA 94 dRrEEekmCDhLIaaarlRDsvnAtrLleKisnILsdkhgawggtshsss dRrEEekmCDhLI+aa++RD+v+A++L++Ki+nIL++khgawg++shs KIAA1544 95 DRREEEKMCDHLISAAKHRDHVTANQLKQKILNILTNKHGAWGAVSHS-- 142 ggaivgavqllqFWkLDvWEDDsRRRkRFVrNAyGSrHeEAnLkeavenv ql++FW+LD+WEDD+RRR+RFVrNA+GS+H+EA+Lk+a+e+ KIAA1544 143 --------QLHDFWRLDYWEDDLRRRRRFVRNAFGSTHAEALLKAAIEY- 183 cifklrEepeiseeekirKvkkglfSqrqnssnhpsgqhngellgehELv ++ee+++K+kk ++Sq+++++n e+EL+ KIAA1544 184 -----------GTEEDVVKSKKTFRSQAIVNQN-----------AETELM 211 lEsD<-* lE+D KIAA1544 212 LEGD 215 PF02138.8.ls: domain 1 of 1, from 368 to 645: score 706.5, E = 1.8e-209 *->TkRWqrGeISNFeYLmhLNtlAGRsyNDLsQYPVFPWIlADYtSesL T+RWqr+eISNFeYLm+LNt+AGR+yNDL+QYPVFPW+l++Y+Se+L KIAA1544 368 TQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVLTNYESEEL 414 DLsnPstFRdLSKPiGAQspeReeqFleRYesledpeekevppFHYGtHY DL+ P +FRdLSKPiGA++p+R+ +++eRYe +ed++ +pp+HY tHY KIAA1544 415 DLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEDDQ---SPPYHYNTHY 461 SSagiVlfYLiRlePFteefLaLQgGkFDhADRlFhSieetWrsaslenm S+a +l++L+R+ePFt+ fL+ +GkFDh+DR+F+S++++Wr s++++ KIAA1544 462 STATSTLSWLVRIEPFTTFFLNANDGKFDHPDRTFSSVARSWRT-SQRDT 510 tDVKELIPEFFyLPEfLvNrngfDlGvrQnGekVnDVdLPPWAkgDEKAd +DVKELIPEF+yLPE++vN+ng++lGvr + +VnDVdLPPWAk KIAA1544 511 SDVKELIPEFYYLPEMFVNSNGYNLGVREDEVVVNDVDLPPWAK-----K 555 PeeFiqkhReALESdYVSahLHeWIDLIFGYKQrGkeAvkAiNVFhhltY Pe+F++++R ALES++VS++LH+WIDLIFGYKQrG+eAv+A+NVFh+ltY KIAA1544 556 PEDFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAVRALNVFHYLTY 605 eGaVDldsieDPverrAieaqIknFGQTPkQLFtkPHPkR<-* eG+V+ldsi+DPv r+A+eaqI nFGQTP+QL+++PHP+R KIAA1544 606 EGSVNLDSITDPVLREAMEAQIQNFGQTPSQLLIEPHPPR 645 PF02138.8.fs: domain 1 of 1, from 368 to 645: score 704.6, E = 6.5e-209 *->TkRWqrGeISNFeYLmhLNtlAGRsyNDLsQYPVFPWIlADYtSesL T+RWqr+eISNFeYLm+LNt+AGR+yNDL+QYPVFPW+l++Y+Se+L KIAA1544 368 TQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVLTNYESEEL 414 DLsnPstFRdLSKPiGAQspeReeqFleRYesledpeekevppFHYGtHY DL+ P +FRdLSKPiGA++p+R+ +++eRYe +ed++ +pp+HY tHY KIAA1544 415 DLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEDDQ---SPPYHYNTHY 461 SSagiVlfYLiRlePFteefLaLQgGkFDhADRlFhSieetWrsaslenm S+a +l++L+R+ePFt+ fL+ +GkFDh+DR+F+S++++Wr s++++ KIAA1544 462 STATSTLSWLVRIEPFTTFFLNANDGKFDHPDRTFSSVARSWRT-SQRDT 510 tDVKELIPEFFyLPEfLvNrngfDlGvrQnGekVnDVdLPPWAkgDEKAd +DVKELIPEF+yLPE++vN+ng++lGvr + +VnDVdLPPWAk KIAA1544 511 SDVKELIPEFYYLPEMFVNSNGYNLGVREDEVVVNDVDLPPWAK-----K 555 PeeFiqkhReALESdYVSahLHeWIDLIFGYKQrGkeAvkAiNVFhhltY Pe+F++++R ALES++VS++LH+WIDLIFGYKQrG+eAv+A+NVFh+ltY KIAA1544 556 PEDFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAVRALNVFHYLTY 605 eGaVDldsieDPverrAieaqIknFGQTPkQLFtkPHPkR<-* eG+V+ldsi+DPv r+A+eaqI nFGQTP+QL+++PHP+R KIAA1544 606 EGSVNLDSITDPVLREAMEAQIQNFGQTPSQLLIEPHPPR 645 PF00400.22.fs: domain 2 of 5, from 792 to 834: score 27.2, E = 1.1e-06 *->geck.vl.gHtstVtcvafspd...sgpllasgSrDgtikiWd<-* g+++++ gH + Vtc+a s + ++ ++++sgSrD t+ +W KIAA1544 792 GKLTqIVfGHWDVVTCLARSESyigGDCYIVSGSRDATLLLWY 834 PF00400.22.ls: domain 2 of 5, from 792 to 834: score 29.1, E = 1.4e-05 *->geck.vl.gHtstVtcvafspd...sgpllasgSrDgtikiWd<-* g+++++ gH + Vtc+a s + ++ ++++sgSrD t+ +W KIAA1544 792 GKLTqIVfGHWDVVTCLARSESyigGDCYIVSGSRDATLLLWY 834 PF00400.22.fs: domain 5 of 5, from 976 to 1014: score 13.0, E = 0.011 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++ +++g +++++++ s+d +++l++g + g+i ++ KIAA1544 976 FKQLyIYpGCDAGIRAMDLSHD-QRTLITGMASGSIVAFN 1014 //