hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-05515790/chunk_1/iprscan-20080502-05515790.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1544 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00320 58.3 1e-12 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00320 1/5 751 788 .. 1 46 [] 0.8 3.7e+02 SM00320 2/5 791 834 .. 1 46 [] 13.3 3.8 SM00320 3/5 851 890 .. 1 46 [] 9.4 16 SM00320 4/5 934 972 .. 1 46 [] 18.9 0.5 SM00320 5/5 975 1014 .. 1 46 [] 15.8 1.5 Alignments of top-scoring domains: SM00320: domain 1 of 5, from 751 to 788: score 0.8, E = 3.7e+02 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t+ + ++++ ++ ++ + d+ +l++g +D++ r++ KIAA1544 751 TdLVDQSIQ-INA----HCFVVTADN-----RYILICGFwDKSFRVY 787 d<-* + KIAA1544 788 S 788 SM00320: domain 2 of 5, from 791 to 834: score 13.3, E = 3.8 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t+kl+++ gH + Vt++a s + + ++ +++sgs+D t+ lW KIAA1544 791 TgKLTQIVFGHWD--VVTCLARSESYIG--GDCYIVSGSrDATLLLW 833 d<-* KIAA1544 834 Y 834 SM00320: domain 3 of 5, from 851 to 890: score 9.4, E = 16 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + + ++l+gH++ +V +v+++ l++sg + g + + KIAA1544 851 YpAPRAVLTGHDH--EVVCVSVCAEL------GLVISGAkEGPCLVH 889 d<-* KIAA1544 890 T 890 SM00320: domain 4 of 5, from 934 to 972: score 18.9, E = 0.5 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++kll+ ++ ++ + +++ s+dg + l++g+++g + +W KIAA1544 934 NgKLLAQME-IND--STRAILLSSDG------QNLVTGGdNGVVEVW 971 d<-* KIAA1544 972 Q 972 SM00320: domain 5 of 5, from 975 to 1014: score 15.8, E = 1.5 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + k+l++++g ++ ++++++ s+d + l++g g+i + KIAA1544 975 DfKQLYIYPGCDA--GIRAMDLSHDQ------RTLITGMaSGSIVAF 1013 d<-* + KIAA1544 1014 N 1014 //