hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05570999/chunk_1/iprscan-20080502-05570999.nocrc
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Query sequence: KIAA1547
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 167.0    1.9e-45   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/7     567   604 ..     1    46 []    22.7    0.053
SM00320    2/7     610   651 ..     1    46 []    22.1    0.079
SM00320    3/7     656   695 ..     1    46 []    29.4  0.00049
SM00320    4/7     698   737 ..     1    46 []    44.6  1.3e-08
SM00320    5/7     740   778 ..     1    46 []     6.1       54
SM00320    6/7     780   819 ..     1    46 []    22.2    0.075
SM00320    7/7     820   860 ..     1    46 []    20.1     0.32

Alignments of top-scoring domains:
SM00320: domain 1 of 7, from 567 to 604: score 22.7, E = 0.053
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgsDgtirlWd
                        +++ tl+ H     V++v++s         +++++g+ g++++Wd
    KIAA1547   567    HaRQINTLS-HGE--VVCAVTISNPT------RHVYTGGKGCVKIWD 604  

                   <-*
                      
    KIAA1547     -     -    

SM00320: domain 2 of 7, from 610 to 651: score 22.1, E = 0.079
                   *->t.kllrtlk..gHtgespVtsvafspdggssdspnllasgs.Dgtir
                      ++++++ l+    ++  +++s++  pdg      + l++g++ +t+ 
    KIAA1547   610    SkSPISQLDclNRDN--YIRSCKLLPDG------RTLIVGGeASTLT 648  

                   lWd<-*
                   +Wd   
    KIAA1547   649 IWD    651  

SM00320: domain 3 of 7, from 656 to 695: score 29.4, E = 0.00049
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t++  ++l+      +++++a+spd       ++ +s+++Dg+i +W
    KIAA1547   656    TpRIKAELTSSAP--ACYALAISPDA------KVCFSCCsDGNIAVW 694  

                   d<-*
                   d   
    KIAA1547   695 D    695  

SM00320: domain 4 of 7, from 698 to 737: score 44.6, E = 1.3e-08
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++l+r ++gHt+  + +++++s+dg      + l +g+ D+t+r W
    KIAA1547   698    NqTLVRQFQGHTD--GASCIDISHDG------TKLWTGGlDNTVRSW 736  

                   d<-*
                   d   
    KIAA1547   737 D    737  

SM00320: domain 5 of 7, from 740 to 778: score 6.1, E = 54
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++++l+  +  t+   + s+ ++p+g      ++la+g + +++ + 
    KIAA1547   740    EgRQLQQHD-FTS--QIFSLGYCPTG------EWLAVGMeSSNVEVL 777  

                   d<-*
                   +   
    KIAA1547   778 H    778  

SM00320: domain 6 of 7, from 780 to 819: score 22.2, E = 0.075
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+   + l+ H++   V+s++f   g      ++++s ++D+ +  W
    KIAA1547   780    TkPDKYQLHLHES--CVLSLKFAYCG------KWFVSTGkDNLLNAW 818  

                   d<-*
                       
    KIAA1547   819 R    819  

SM00320: domain 7 of 7, from 820 to 860: score 20.1, E = 0.32
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+   ++++  ++ s+V+s+++s d+      +++++gs+D++  ++
    KIAA1547   820    TpYGASIFQSKES-SSVLSCDISADD------KYIVTGSgDKKATVY 859  

                   d<-*
                   +   
    KIAA1547   860 E    860  

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