hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05584725/chunk_1/iprscan-20080502-05584725.nocrc
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Query sequence: KIAA1548
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08736.1.fs FERM adjacent (FA)                              63.0    3.4e-17   1
PF08736.1.ls FERM adjacent (FA)                              65.0    2.3e-16   1
PF00373.8.fs FERM domain (Band 4.1 family)                   50.4    1.2e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00373.8.fs   1/1       1    48 [.   155   210 .]    50.4  1.2e-15
PF08736.1.fs   1/1     147   193 ..     1    50 []    63.0  3.4e-17
PF08736.1.ls   1/1     147   193 ..     1    50 []    65.0  2.3e-16

Alignments of top-scoring domains:
PF00373.8.fs: domain 1 of 1, from 1 to 48: score 50.4, E = 1.2e-15
                   *->kllPqRVlnqkqltkddfEekIaelHkeHrGmspdeAeleYLkiArd
                      ++ P       q  +++ E  I+e  ke+rG++p++Ae +YL+ A+ 
    KIAA1548     1    RFVP------IQ--TEEMELAIFEKWKEYRGQTPAQAETNYLNKAKW 39   

                   LemYGVdff<-*
                   LemYGVd +   
    KIAA1548    40 LEMYGVDMH    48   

PF08736.1.fs: domain 1 of 1, from 147 to 193: score 63.0, E = 3.4e-17
                   *->psskFfislGSkFRYSGRTqkQtveasseigRkppqFeRspSkryas
                      ++s+F  +lGS+FRYSG+T++Qt++++++  R++  FeR+pSkry++
    KIAA1548   147    HRSGFI-RLGSRFRYSGKTEYQTTKTNKA--RRSTSFERRPSKRYSR 190  

                   rrs<-*
                   r+    
    KIAA1548   191 RTL    193  

PF08736.1.ls: domain 1 of 1, from 147 to 193: score 65.0, E = 2.3e-16
                   *->psskFfislGSkFRYSGRTqkQtveasseigRkppqFeRspSkryas
                      ++s+F  +lGS+FRYSG+T++Qt++++++  R++  FeR+pSkry++
    KIAA1548   147    HRSGFI-RLGSRFRYSGKTEYQTTKTNKA--RRSTSFERRPSKRYSR 190  

                   rrs<-*
                   r+    
    KIAA1548   191 RTL    193  

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