HUGE

Gene/Protein Characteristic Table for KIAA1549

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00246
Accession No. :	AB046769
Description :
HUGO Gene Name :
Clone Name :	fh16155s1 [Vector Info]
Flexi ORF Clone :	pF1KA1549
Source :	Human fetal brain
Note :	We replaced fh16155, former representative clones for KIAA1549 with fh16155s1. (2003/8/28)

Features of the cloned DNA sequence	Description

Length: 6395 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 797 bp

Genome contig ID gi89161213r_138072394
PolyA signal sequence
(AATACA,-25)
+----*----+----*----+----*----+----
GATTATCCAAAATACAGATCAAAGTTTAGATCTAC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ATTCTTCATTGTATTTGCTGTTTCTTAATTGGGCACACACAACTCCTGGT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 7 r 138172394 138254704 19 99.6 Perfect prediction

Features of the protein sequence	Description

Length: 1865 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
NP_065961	99.8	hypothetical pr...	Homo sapiens
XP_001107649	95.2	similar to K06A...	Macaca mulatta
EAW83899	99.9	hCG1811076 [Hom...	Homo sapiens
XP_991947	71.9	similar to D630...	Mus musculus
XP_979772	71.9	hypothetical pr...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

ScanRegExp IPR000792 1076 1103 PS00622 Bacterial regulatory protein

Search method	interpro_ID	From	To	Entry	Definition
ScanRegExp	IPR000792	1076	1103	PS00622	Bacterial regulatory protein

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 1231 WVIVGVVIPVLVVMVIVVILYWK 1253 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1231	WVIVGVVIPVLVVMVIVVILYWK	1253	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GAAGAGCTCACGGATAAAACG

Primer_r
: ATGTAGGCTGAGTTGTGGACG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 7

Experimental conditions

Panel name	: CCR
Primer_f	: GAAGAGCTCACGGATAAAACG
Primer_r	: ATGTAGGCTGAGTTGTGGACG
PCR product length	: 150 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	797 bp
Genome contig ID	gi89161213r_138072394
PolyA signal sequence (AATACA,-25)	+--------+--------+----*----+---- GATTATCCAAAATACAGATCAAAGTTTAGATCTAC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ATTCTTCATTGTATTTGCTGTTTCTTAATTGGGCACACACAACTCCTGGT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	7	r	138172394	138254704	19	99.6	Perfect prediction

Gene/Protein Characteristic Table for KIAA1549

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information