hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /db/iprscan/data/smart.HMMs.bin
Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-06331746/chunk_1/iprscan-20080502-06331746.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: KIAA1568
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SM00409 271.8 5.2e-77 5
SM00408 258.4 5.6e-73 5
SM00060 140.6 1.6e-37 3
SM00406 55.4 7.2e-12 3
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SM00409 1/5 39 131 .. 1 58 [] 41.4 1.2e-07
SM00408 1/5 45 119 .. 1 56 [] 46.3 4e-09
SM00409 2/5 141 224 .. 1 58 [] 60.6 2e-13
SM00408 2/5 147 212 .. 1 56 [] 46.4 3.7e-09
SM00409 3/5 233 313 .. 1 58 [] 51.0 1.5e-10
SM00408 3/5 239 302 .. 1 56 [] 52.6 5.2e-11
SM00406 1/3 243 297 .. 1 76 [] 5.8 0.76
SM00409 4/5 322 411 .. 1 58 [] 61.2 1.3e-13
SM00408 4/5 328 400 .. 1 56 [] 54.4 1.5e-11
SM00406 2/3 332 395 .. 1 76 [] 21.6 0.02
SM00409 5/5 426 508 .. 1 58 [] 57.6 1.6e-12
SM00408 5/5 432 497 .. 1 56 [] 58.7 7.3e-13
SM00406 3/3 436 492 .. 1 76 [] 28.1 0.0013
SM00060 1/3 524 606 .. 1 69 [] 68.4 9e-16
SM00060 2/3 640 723 .. 1 69 [] 22.7 0.05
SM00060 3/3 738 825 .. 1 69 [] 49.5 4.4e-10
Alignments of top-scoring domains:
SM00409: domain 1 of 5, from 39 to 131: score 41.4, E = 1.2e-07
*->pp.vtvkeGesvtLtC.as.....titWy..................
p++v v+ Ge+ tL+C+a++ +++ti Wy+++ + ++++++++++
KIAA1568 39 PSdVIVSKGEPTTLNCkAEgrptpTIEWYkdgervetdkddprshrm 85
.........LtI.nvtpe..DsesgGtYtCaat..sgsasseqgttLtVl
++++ L+I + +++++D+ G Y+C+a++ g+a s ++ L+V
KIAA1568 86 llpsgslffLRIvHGRRSkpDE---GSYVCVARnyLGEAVS-RNASLEVA 131
<-*
KIAA1568 - -
SM00408: domain 1 of 5, from 45 to 119: score 46.3, E = 4e-09
*->leGqsVtLtCpasgdpvpnItWlk.gkplp.............sgst
G++ tL+C+a+g+p+p+I W+k+g++++++++++++++ +++
KIAA1568 45 SKGEPTTLNCKAEGRPTPTIEWYKdGERVEtdkddprshrmllPSGS 91
Ltiknvsle.....DsGlYtCvArNsvg<-*
L + ++ ++++++D+G Y+CvArN g
KIAA1568 92 LFFLRIVHGrrskpDEGSYVCVARNYLG 119
SM00409: domain 2 of 5, from 141 to 224: score 60.6, E = 2e-13
*->pp.vtvkeGesvtLtC.as......titWy.................
p +v+v +Ge++ L+C+ + +++ +ti+W++++ + +++ + + ++
KIAA1568 141 PTdVVVAAGEPAILECqPPrghpepTIYWKkdkvriddkeerisirg 187
..LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
++L I+n +++D+ G YtC+ t+ g+ s ++++LtV+
KIAA1568 188 gkLMIsNTRKSDA---GMYTCVGTnmVGERDS-DPAELTVF 224
SM00408: domain 2 of 5, from 147 to 212: score 46.4, E = 3.7e-09
*->leGqsVtLtCp.asgdpvpnItWlk.gkplp........sgstLtik
G++++L+C + +g p+p+I W+k+ ++++++++ + g+ L i+
KIAA1568 147 AAGEPAILECQpPRGHPEPTIYWKKdKVRIDdkeerisiRGGKLMIS 193
nvsleDsGlYtCvArNsvg<-*
n +++D+G+YtCv++N vg
KIAA1568 194 NTRKSDAGMYTCVGTNMVG 212
SM00409: domain 3 of 5, from 233 to 313: score 51.0, E = 1.5e-10
*->pp.vtvkeGesvtLtC.as.....titWy..................
p +++v e e v+++C++++++ +t++W++++ + ++++ + +++ +
KIAA1568 233 PInQVVLEEEAVEFRCqVQgdpqpTVRWKkddadlprgrydikddyt 279
LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
L+I++ D+ GtY C a+++ g+ ++ ++tLtV+
KIAA1568 280 LRIkKTMSTDE---GTYMCIAEnrVGKMEA--SATLTVR 313
SM00408: domain 3 of 5, from 239 to 302: score 52.6, E = 5.2e-11
*->leGqsVtLtCpasgdpvpnItWlk.gkplp.......sgstLtiknv
le ++V+++C + gdp p+++W+k++ lp+++ + +++ tL+ik
KIAA1568 239 LEEEAVEFRCQVQGDPQPTVRWKKdDADLPrgrydikDDYTLRIKKT 285
sleDsGlYtCvArNsvg<-*
D+G+Y C+A+N+vg
KIAA1568 286 MSTDEGTYMCIAENRVG 302
SM00406: domain 1 of 3, from 243 to 297: score 5.8, E = 0.76
*->svtLsCkaSgftf.yvsWvrqpPsstgkgkglewlgysykgRvtisk
v+ C++ g+ ++v W + +++ +gR+ i+
KIAA1568 243 AVEFRCQVQGDPQpTVRWKKDDADLP-------------RGRYDIKD 276
dtltraskndvsLtisnLrpeDtgtYyCar<-*
d +L+i+ + D+gtY C
KIAA1568 277 D---------YTLRIKKTMSTDEGTYMCIA 297
SM00409: domain 4 of 5, from 322 to 411: score 61.2, E = 1.3e-13
*->pp.vtvkeGesvtLtC.as.....titWy..................
p+++ v G +vt++C+ ++++ + ++W + ++++ +++++++++
KIAA1568 322 PRdQIVAQGRTVTFPCeTKgnpqpAVFWQkegsqnllfpnqpqqpns 368
.........LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-
+ + +++++LtI+n++++D+ G Y C+a + +gs+ + ++L+V+
KIAA1568 369 rcsvsptgdLTItNIQRSDA---GYYICQALtvAGSILA--KAQLEVT 411
*
KIAA1568 - -
SM00408: domain 4 of 5, from 328 to 400: score 54.4, E = 1.5e-11
*->leGqsVtLtCpasgdpvpnItWlk..gkplp...............s
+G++Vt++C+ g+p p + W k++++ l ++++++++++ + +
KIAA1568 328 AQGRTVTFPCETKGNPQPAVFWQKegSQNLLfpnqpqqpnsrcsvsP 374
gstLtiknvsleDsGlYtCvArNsvg<-*
+ Lti+n++++D+G+Y C+A +g
KIAA1568 375 TGDLTITNIQRSDAGYYICQALTVAG 400
SM00406: domain 2 of 3, from 332 to 395: score 21.6, E = 0.02
*->svtLsCkaSgftf.yvsWvrqpPsstgkgkglewlgy...sykgRvt
+vt +C+++g+ + v+W+++ g++ ++ ++++ +R +
KIAA1568 332 TVTFPCETKGNPQpAVFWQKE-------GSQNLLFPNqpqQPNSRCS 371
iskdtltraskndvsLtisnLrpeDtgtYyCar<-*
+s Lti+n + +D g+Y+C+
KIAA1568 372 VSPTG---------DLTITNIQRSDAGYYICQA 395
SM00409: domain 5 of 5, from 426 to 508: score 57.6, E = 1.6e-12
*->pp.vtvkeGesvtLtC.as.....titWy..................
p ++t + +++ L+C+a++++ + i+W++ + + ++++++ + + +
KIAA1568 426 PAnQTLAVDGTALLKCkATgdplpVISWLkegftfpgrdpratiqeq 472
..LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
++L+I+n++ +D+ GtYtC+at++sg++s ++ L V+
KIAA1568 473 gtLQIkNLRISDT---GTYTCVATssSGETSW--SAVLDVT 508
SM00408: domain 5 of 5, from 432 to 497: score 58.7, E = 7.3e-13
*->leGqsVtLtCpasgdpvpnItWlk.gkplp.........sgstLtik
++++ L+C+a+gdp p I+Wlk+g p+++++ + + +tL+ik
KIAA1568 432 AVDGTALLKCKATGDPLPVISWLKeGFTFPgrdpratiqEQGTLQIK 478
nvsleDsGlYtCvArNsvg<-*
n + +D G+YtCvA++s g
KIAA1568 479 NLRISDTGTYTCVATSSSG 497
SM00406: domain 3 of 3, from 436 to 492: score 28.1, E = 0.0013
*->svtLsCkaSgftf.yvsWvrqpPsstgkgkglewlgysykgRvtisk
++ L Cka+g+ ++++sW+++ g + g+ R ti
KIAA1568 436 TALLKCKATGDPLpVISWLKE---------GFTFPGR--DPRATIQE 471
dtltraskndvsLtisnLrpeDtgtYyCar<-*
+ +L+i+nLr++DtgtY+C
KIAA1568 472 QG---------TLQIKNLRISDTGTYTCVA 492
SM00060: domain 1 of 3, from 524 to 606: score 68.4, E = 9e-16
*->PgpPsnptelrvtdvtststsdltsvtlsWepP..........ivgY
PgpPs ++vtdvt++ svtlsW+p ++ + + +i++
KIAA1568 524 PGPPSK---PQVTDVTKN------SVTLSWQPGtpgtlpasayIIEA 561
r...................ytltgLkPgaepwteYefrVrAvngndaGe
+++++++++++ + ++++ yt++gL+P+ t Y f VrA+n +G
KIAA1568 562 FsqsvsnswqtvanhvkttlYTVRGLRPN----TIYLFMVRAINP--QGL 605
g<-*
+
KIAA1568 606 S 606
SM00060: domain 2 of 3, from 640 to 723: score 22.7, E = 0.05
*->PgpPsnptelrvtdvtststsdltsvtlsWepP.....ivgYr....
n ++v t+t +v+++W+ + i gYr+ +
KIAA1568 640 LVRLHN---PVVL--TPT------TVQVTWTVDrqpqfIQGYRvmyr 675
.......................ytltgLkPgaepwteYefrVrAvngnd
++++ + ++++++ + +++++++++l +Lk g +Ye++Vr +
KIAA1568 676 qtsglqatsswqnldakvptersAVLVNLKKG----VTYEIKVRPYFN-- 719
aGeg<-*
+g
KIAA1568 720 EFQG 723
SM00060: domain 3 of 3, from 738 to 825: score 49.5, E = 4.4e-10
*->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr.
P++P+ + ++v v+s ++ ts+++sW+pP++++ ++ i +Y+
KIAA1568 738 PSAPPQS--VTVLTVGSYNS---TSISVSWDPPppdhqngiIQEYKi 779
.....................ytltgLkPgaepwteYefrVrAvngndaG
+ +++++ +++++ +++++ gL Pg +Y++ V+A ++ aG
KIAA1568 780 wclgnetrfhinktvdaairsVIIGGLFPG----IQYRVEVAASTS--AG 823
eg<-*
g
KIAA1568 824 VG 825
//