hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06331746/chunk_1/iprscan-20080502-06331746.nocrc
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Query sequence: KIAA1568
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00409                                                 271.8    5.2e-77   5
SM00408                                                 258.4    5.6e-73   5
SM00060                                                 140.6    1.6e-37   3
SM00406                                                  55.4    7.2e-12   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00409    1/5      39   131 ..     1    58 []    41.4  1.2e-07
SM00408    1/5      45   119 ..     1    56 []    46.3    4e-09
SM00409    2/5     141   224 ..     1    58 []    60.6    2e-13
SM00408    2/5     147   212 ..     1    56 []    46.4  3.7e-09
SM00409    3/5     233   313 ..     1    58 []    51.0  1.5e-10
SM00408    3/5     239   302 ..     1    56 []    52.6  5.2e-11
SM00406    1/3     243   297 ..     1    76 []     5.8     0.76
SM00409    4/5     322   411 ..     1    58 []    61.2  1.3e-13
SM00408    4/5     328   400 ..     1    56 []    54.4  1.5e-11
SM00406    2/3     332   395 ..     1    76 []    21.6     0.02
SM00409    5/5     426   508 ..     1    58 []    57.6  1.6e-12
SM00408    5/5     432   497 ..     1    56 []    58.7  7.3e-13
SM00406    3/3     436   492 ..     1    76 []    28.1   0.0013
SM00060    1/3     524   606 ..     1    69 []    68.4    9e-16
SM00060    2/3     640   723 ..     1    69 []    22.7     0.05
SM00060    3/3     738   825 ..     1    69 []    49.5  4.4e-10

Alignments of top-scoring domains:
SM00409: domain 1 of 5, from 39 to 131: score 41.4, E = 1.2e-07
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                      p++v v+ Ge+ tL+C+a++ +++ti Wy+++ +  ++++++++++ 
    KIAA1568    39    PSdVIVSKGEPTTLNCkAEgrptpTIEWYkdgervetdkddprshrm 85   

                   .........LtI.nvtpe..DsesgGtYtCaat..sgsasseqgttLtVl
                     ++++   L+I + +++++D+   G Y+C+a++  g+a s  ++ L+V 
    KIAA1568    86 llpsgslffLRIvHGRRSkpDE---GSYVCVARnyLGEAVS-RNASLEVA 131  

                   <-*
                      
    KIAA1568     -     -    

SM00408: domain 1 of 5, from 45 to 119: score 46.3, E = 4e-09
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp.............sgst
                        G++ tL+C+a+g+p+p+I W+k+g++++++++++++++    +++
    KIAA1568    45    SKGEPTTLNCKAEGRPTPTIEWYKdGERVEtdkddprshrmllPSGS 91   

                   Ltiknvsle.....DsGlYtCvArNsvg<-*
                   L + ++  ++++++D+G Y+CvArN  g   
    KIAA1568    92 LFFLRIVHGrrskpDEGSYVCVARNYLG    119  

SM00409: domain 2 of 5, from 141 to 224: score 60.6, E = 2e-13
                   *->pp.vtvkeGesvtLtC.as......titWy.................
                      p +v+v +Ge++ L+C+ + +++ +ti+W++++ + +++  + + ++
    KIAA1568   141    PTdVVVAAGEPAILECqPPrghpepTIYWKkdkvriddkeerisirg 187  

                   ..LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                   ++L I+n +++D+   G YtC+ t+  g+  s ++++LtV+   
    KIAA1568   188 gkLMIsNTRKSDA---GMYTCVGTnmVGERDS-DPAELTVF    224  

SM00408: domain 2 of 5, from 147 to 212: score 46.4, E = 3.7e-09
                   *->leGqsVtLtCp.asgdpvpnItWlk.gkplp........sgstLtik
                        G++++L+C + +g p+p+I W+k+  ++++++++ +  g+ L i+
    KIAA1568   147    AAGEPAILECQpPRGHPEPTIYWKKdKVRIDdkeerisiRGGKLMIS 193  

                   nvsleDsGlYtCvArNsvg<-*
                   n +++D+G+YtCv++N vg   
    KIAA1568   194 NTRKSDAGMYTCVGTNMVG    212  

SM00409: domain 3 of 5, from 233 to 313: score 51.0, E = 1.5e-10
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                      p +++v e e v+++C++++++ +t++W++++ + ++++ + +++ +
    KIAA1568   233    PInQVVLEEEAVEFRCqVQgdpqpTVRWKkddadlprgrydikddyt 279  

                   LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                   L+I++    D+   GtY C a+++ g+ ++  ++tLtV+   
    KIAA1568   280 LRIkKTMSTDE---GTYMCIAEnrVGKMEA--SATLTVR    313  

SM00408: domain 3 of 5, from 239 to 302: score 52.6, E = 5.2e-11
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp.......sgstLtiknv
                      le ++V+++C + gdp p+++W+k++  lp+++ + +++ tL+ik  
    KIAA1568   239    LEEEAVEFRCQVQGDPQPTVRWKKdDADLPrgrydikDDYTLRIKKT 285  

                   sleDsGlYtCvArNsvg<-*
                      D+G+Y C+A+N+vg   
    KIAA1568   286 MSTDEGTYMCIAENRVG    302  

SM00406: domain 1 of 3, from 243 to 297: score 5.8, E = 0.76
                   *->svtLsCkaSgftf.yvsWvrqpPsstgkgkglewlgysykgRvtisk
                       v+  C++ g+  ++v W +   +++             +gR+ i+ 
    KIAA1568   243    AVEFRCQVQGDPQpTVRWKKDDADLP-------------RGRYDIKD 276  

                   dtltraskndvsLtisnLrpeDtgtYyCar<-*
                   d          +L+i+   + D+gtY C     
    KIAA1568   277 D---------YTLRIKKTMSTDEGTYMCIA    297  

SM00409: domain 4 of 5, from 322 to 411: score 61.2, E = 1.3e-13
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                      p+++ v  G +vt++C+ ++++ + ++W + ++++   +++++++++
    KIAA1568   322    PRdQIVAQGRTVTFPCeTKgnpqpAVFWQkegsqnllfpnqpqqpns 368  

                   .........LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-
                   + + +++++LtI+n++++D+   G Y C+a + +gs+ +   ++L+V+  
    KIAA1568   369 rcsvsptgdLTItNIQRSDA---GYYICQALtvAGSILA--KAQLEVT   411  

                   *
                    
    KIAA1568     -   -    

SM00408: domain 4 of 5, from 328 to 400: score 54.4, E = 1.5e-11
                   *->leGqsVtLtCpasgdpvpnItWlk..gkplp...............s
                       +G++Vt++C+  g+p p + W k++++ l  ++++++++++ + + 
    KIAA1568   328    AQGRTVTFPCETKGNPQPAVFWQKegSQNLLfpnqpqqpnsrcsvsP 374  

                   gstLtiknvsleDsGlYtCvArNsvg<-*
                    + Lti+n++++D+G+Y C+A   +g   
    KIAA1568   375 TGDLTITNIQRSDAGYYICQALTVAG    400  

SM00406: domain 2 of 3, from 332 to 395: score 21.6, E = 0.02
                   *->svtLsCkaSgftf.yvsWvrqpPsstgkgkglewlgy...sykgRvt
                      +vt +C+++g+  + v+W+++       g++  ++  ++++  +R +
    KIAA1568   332    TVTFPCETKGNPQpAVFWQKE-------GSQNLLFPNqpqQPNSRCS 371  

                   iskdtltraskndvsLtisnLrpeDtgtYyCar<-*
                   +s             Lti+n + +D g+Y+C+    
    KIAA1568   372 VSPTG---------DLTITNIQRSDAGYYICQA    395  

SM00409: domain 5 of 5, from 426 to 508: score 57.6, E = 1.6e-12
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                      p ++t  + +++ L+C+a++++ + i+W++ + + ++++++ + + +
    KIAA1568   426    PAnQTLAVDGTALLKCkATgdplpVISWLkegftfpgrdpratiqeq 472  

                   ..LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                   ++L+I+n++ +D+   GtYtC+at++sg++s   ++ L V+   
    KIAA1568   473 gtLQIkNLRISDT---GTYTCVATssSGETSW--SAVLDVT    508  

SM00408: domain 5 of 5, from 432 to 497: score 58.7, E = 7.3e-13
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp.........sgstLtik
                        ++++ L+C+a+gdp p I+Wlk+g   p+++++ + +  +tL+ik
    KIAA1568   432    AVDGTALLKCKATGDPLPVISWLKeGFTFPgrdpratiqEQGTLQIK 478  

                   nvsleDsGlYtCvArNsvg<-*
                   n + +D G+YtCvA++s g   
    KIAA1568   479 NLRISDTGTYTCVATSSSG    497  

SM00406: domain 3 of 3, from 436 to 492: score 28.1, E = 0.0013
                   *->svtLsCkaSgftf.yvsWvrqpPsstgkgkglewlgysykgRvtisk
                      ++ L Cka+g+ ++++sW+++         g  + g+    R ti  
    KIAA1568   436    TALLKCKATGDPLpVISWLKE---------GFTFPGR--DPRATIQE 471  

                   dtltraskndvsLtisnLrpeDtgtYyCar<-*
                   +          +L+i+nLr++DtgtY+C     
    KIAA1568   472 QG---------TLQIKNLRISDTGTYTCVA    492  

SM00060: domain 1 of 3, from 524 to 606: score 68.4, E = 9e-16
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP..........ivgY
                      PgpPs    ++vtdvt++      svtlsW+p  ++  + + +i++ 
    KIAA1568   524    PGPPSK---PQVTDVTKN------SVTLSWQPGtpgtlpasayIIEA 561  

                   r...................ytltgLkPgaepwteYefrVrAvngndaGe
                    +++++++++++ + ++++ yt++gL+P+    t Y f VrA+n   +G 
    KIAA1568   562 FsqsvsnswqtvanhvkttlYTVRGLRPN----TIYLFMVRAINP--QGL 605  

                   g<-*
                   +   
    KIAA1568   606 S    606  

SM00060: domain 2 of 3, from 640 to 723: score 22.7, E = 0.05
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP.....ivgYr....
                           n   ++v   t+t      +v+++W+    +  i gYr+  +
    KIAA1568   640    LVRLHN---PVVL--TPT------TVQVTWTVDrqpqfIQGYRvmyr 675  

                   .......................ytltgLkPgaepwteYefrVrAvngnd
                   ++++ + ++++++ + +++++++++l +Lk g     +Ye++Vr +    
    KIAA1568   676 qtsglqatsswqnldakvptersAVLVNLKKG----VTYEIKVRPYFN-- 719  

                   aGeg<-*
                     +g   
    KIAA1568   720 EFQG    723  

SM00060: domain 3 of 3, from 738 to 825: score 49.5, E = 4.4e-10
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr.
                      P++P+ +  ++v  v+s ++   ts+++sW+pP++++ ++ i +Y+ 
    KIAA1568   738    PSAPPQS--VTVLTVGSYNS---TSISVSWDPPppdhqngiIQEYKi 779  

                   .....................ytltgLkPgaepwteYefrVrAvngndaG
                   +  +++++   +++++   +++++ gL Pg     +Y++ V+A ++  aG
    KIAA1568   780 wclgnetrfhinktvdaairsVIIGGLFPG----IQYRVEVAASTS--AG 823  

                   eg<-*
                    g   
    KIAA1568   824 VG    825  

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