hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-06532199/chunk_1/iprscan-20080502-06532199.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1580 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00560.23.ls Leucine Rich Repeat 114.3 3.1e-31 9 PF00560.23.fs Leucine Rich Repeat 97.5 3.6e-26 9 PF07679.6.fs Immunoglobulin I-set domain 50.4 4.2e-14 1 PF07679.6.ls Immunoglobulin I-set domain 52.3 1.5e-12 1 PF07686.7.fs Immunoglobulin V-set domain 37.1 5.4e-10 1 PF07686.7.ls Immunoglobulin V-set domain 38.8 1.7e-08 1 PF00047.15.fs Immunoglobulin domain 32.5 3.6e-08 1 PF00047.15.ls Immunoglobulin domain 34.4 3.6e-07 1 PF01462.9.fs Leucine rich repeat N-terminal domain 23.9 2.2e-06 1 PF01462.9.ls Leucine rich repeat N-terminal domain 25.8 0.00014 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01462.9.fs 1/1 46 75 .. 1 34 [] 23.9 2.2e-06 PF01462.9.ls 1/1 46 75 .. 1 34 [] 25.8 0.00014 PF00560.23.ls 1/9 77 99 .. 1 24 [] 10.3 3.2 PF00560.23.fs 2/9 101 123 .. 1 24 [] 14.1 0.0083 PF00560.23.ls 2/9 101 123 .. 1 24 [] 16.0 0.13 PF00560.23.fs 3/9 125 147 .. 1 24 [] 13.8 0.01 PF00560.23.ls 3/9 125 147 .. 1 24 [] 15.6 0.16 PF00560.23.fs 4/9 149 171 .. 1 24 [] 12.9 0.017 PF00560.23.ls 4/9 149 171 .. 1 24 [] 14.8 0.29 PF00560.23.ls 6/9 198 218 .. 1 24 [] 10.1 3.4 PF00560.23.fs 7/9 220 242 .. 1 24 [] 17.9 0.00076 PF00560.23.ls 7/9 220 242 .. 1 24 [] 19.8 0.0093 PF00560.23.ls 9/9 268 290 .. 1 24 [] 15.2 0.22 PF00560.23.fs 9/9 268 290 .. 1 24 [] 13.4 0.013 PF07686.7.ls 1/1 352 444 .. 1 141 [] 38.8 1.7e-08 PF07686.7.fs 1/1 352 444 .. 1 141 [] 37.1 5.4e-10 PF07679.6.fs 1/1 354 443 .. 1 96 [] 50.4 4.2e-14 PF07679.6.ls 1/1 354 443 .. 1 96 [] 52.3 1.5e-12 PF00047.15.ls 1/1 368 428 .. 1 65 [] 34.4 3.6e-07 PF00047.15.fs 1/1 368 428 .. 1 65 [] 32.5 3.6e-08 Alignments of top-scoring domains: PF01462.9.fs: domain 1 of 1, from 46 to 75: score 23.9, E = 2.2e-06 *->aCpapCtCserytdglvVdCsgrgLtvavPrdlP<-* Cp C Cs + ++V C +++L+ +vP++++ KIAA1580 46 TCPSVCSCS---NQFSKVICVRKNLR-EVPDGIS 75 PF01462.9.ls: domain 1 of 1, from 46 to 75: score 25.8, E = 0.00014 *->aCpapCtCserytdglvVdCsgrgLtvavPrdlP<-* Cp C Cs + ++V C +++L+ +vP++++ KIAA1580 46 TCPSVCSCS---NQFSKVICVRKNLR-EVPDGIS 75 PF00560.23.ls: domain 1 of 9, from 77 to 99: score 10.3, E = 3.2 *->nLeeLdLsgCNpsltgslpss.l.nl<-* n + L+L+ N +++ + ++++++l KIAA1580 77 NTRLLNLHE-N-QIQ-IIKVNsFkHL 99 PF00560.23.fs: domain 2 of 9, from 101 to 123: score 14.1, E = 0.0083 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +Le+L Ls+ N ++ ++++ +++++l KIAA1580 101 HLEILQLSR-N-HI-RTIEIGaFnGL 123 PF00560.23.ls: domain 2 of 9, from 101 to 123: score 16.0, E = 0.13 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +Le+L Ls+ N ++ ++++ +++++l KIAA1580 101 HLEILQLSR-N-HI-RTIEIGaFnGL 123 PF00560.23.fs: domain 3 of 9, from 125 to 147: score 13.8, E = 0.01 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL +L+L + N +lt ++p++++ l KIAA1580 125 NLNTLELFD-N-RLT-TIPNGaFvYL 147 PF00560.23.ls: domain 3 of 9, from 125 to 147: score 15.6, E = 0.16 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL +L+L + N +lt ++p++++ l KIAA1580 125 NLNTLELFD-N-RLT-TIPNGaFvYL 147 PF00560.23.fs: domain 4 of 9, from 149 to 171: score 12.9, E = 0.017 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L+eL L++ N +++ s+ps +++ KIAA1580 149 KLKELWLRN-N-PIE-SIPSYaFnRI 171 PF00560.23.ls: domain 4 of 9, from 149 to 171: score 14.8, E = 0.29 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L+eL L++ N +++ s+ps +++ KIAA1580 149 KLKELWLRN-N-PIE-SIPSYaFnRI 171 PF00560.23.ls: domain 6 of 9, from 198 to 218: score 10.1, E = 3.4 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL++L+L C +l +++p+ l+ l KIAA1580 198 NLRYLNLAMC--NL-REIPN-LtPL 218 PF00560.23.fs: domain 7 of 9, from 220 to 242: score 17.9, E = 0.00076 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L eLdLsg N +l+ + ++++++l KIAA1580 220 KLDELDLSG-N-HLS-AIRPGsFqGL 242 PF00560.23.ls: domain 7 of 9, from 220 to 242: score 19.8, E = 0.0093 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L eLdLsg N +l+ + ++++++l KIAA1580 220 KLDELDLSG-N-HLS-AIRPGsFqGL 242 PF00560.23.ls: domain 9 of 9, from 268 to 290: score 15.2, E = 0.22 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L e++L + N +lt lp++ ++ l KIAA1580 268 SLVEINLAH-N-NLT-LLPHDlFtPL 290 PF00560.23.fs: domain 9 of 9, from 268 to 290: score 13.4, E = 0.013 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L e++L + N +lt lp++ ++ l KIAA1580 268 SLVEINLAH-N-NLT-LLPHDlFtPL 290 PF07686.7.ls: domain 1 of 1, from 352 to 444: score 38.8, E = 1.7e-08 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss +v epp+ + v eG ++L+C s + KIAA1580 352 YAPVIVEPPA------------DLNVTEGMAAELKCRAS-----T-- 379 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls + +s++W +g+ +++ +k r+ + KIAA1580 380 --SLTSVSWIT---------------------PNGTVMTHGAYKVRIAVL 406 gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* ++++ L+ +n+++ D+G+Y+C vsns ++ + +L V+ KIAA1580 407 SDGT-----LNFTNVTVQDTGMYTCMVSNS-VGNTTASATLNVT 444 PF07686.7.fs: domain 1 of 1, from 352 to 444: score 37.1, E = 5.4e-10 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss +v epp+ + v eG ++L+C s + KIAA1580 352 YAPVIVEPPA------------DLNVTEGMAAELKCRAS-----T-- 379 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls + +s++W +g+ +++ +k r+ + KIAA1580 380 --SLTSVSWIT---------------------PNGTVMTHGAYKVRIAVL 406 gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* ++++ L+ +n+++ D+G+Y+C vsns ++ + +L V+ KIAA1580 407 SDGT-----LNFTNVTVQDTGMYTCMVSNS-VGNTTASATLNVT 444 PF07679.6.fs: domain 1 of 1, from 354 to 443: score 50.4, E = 4.2e-14 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssvll P+++ +p d++V+eG +a++ C+++ + +VsW +G ++ KIAA1580 354 PVIVEPPADLNVTEGMAAELKCRASTS-LTSVSWITPnGTVMTH--- 396 ps...drfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasae + + r+ v dg tL + nv+ D G YtC ++Ns+G +asa+ KIAA1580 397 -GaykVRIAVLSDG-----TLNFTNVTVQDTGMYTCMVSNSVGNTTASAT 440 LtV<-* L+V KIAA1580 441 LNV 443 PF07679.6.ls: domain 1 of 1, from 354 to 443: score 52.3, E = 1.5e-12 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssvll P+++ +p d++V+eG +a++ C+++ + +VsW +G ++ KIAA1580 354 PVIVEPPADLNVTEGMAAELKCRASTS-LTSVSWITPnGTVMTH--- 396 ps...drfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasae + + r+ v dg tL + nv+ D G YtC ++Ns+G +asa+ KIAA1580 397 -GaykVRIAVLSDG-----TLNFTNVTVQDTGMYTCMVSNSVGNTTASAT 440 LtV<-* L+V KIAA1580 441 LNV 443 PF00047.15.ls: domain 1 of 1, from 368 to 428: score 34.4, E = 3.6e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G + L C++ +++ ++v+W ++++ ++ ++ ++ + s+ + KIAA1580 368 GMAAELKCRA---STSLTSVSWITPNGtVMtHG-AYKVRIAVLSDGT 410 tsLtitnvtpeDggtYtCvv<-* L++tnvt +D+g YtC+v KIAA1580 411 --LNFTNVTVQDTGMYTCMV 428 PF00047.15.fs: domain 1 of 1, from 368 to 428: score 32.5, E = 3.6e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G + L C++ +++ ++v+W ++++ ++ ++ ++ + s+ + KIAA1580 368 GMAAELKCRA---STSLTSVSWITPNGtVMtHG-AYKVRIAVLSDGT 410 tsLtitnvtpeDggtYtCvv<-* L++tnvt +D+g YtC+v KIAA1580 411 --LNFTNVTVQDTGMYTCMV 428 //