hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06532199/chunk_1/iprscan-20080502-06532199.nocrc
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Query sequence: KIAA1580
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00369                                                 144.9    8.6e-39   8
SM00409                                                  58.3    9.8e-13   1
SM00408                                                  41.2    1.4e-07   1
SM00013                                                  28.5     0.0009   1
SM00406                                                  27.7     0.0016   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00013     1/1      46    80 ..     1    38 []    28.5   0.0009
SM00369     1/8      79    98 ..     1    24 []     2.1  2.3e+02
SM00369     2/8      99   122 ..     1    24 []    28.6  0.00084
SM00369     3/8     123   146 ..     1    24 []    21.4     0.12
SM00369     4/8     147   170 ..     1    24 []    27.7   0.0016
SM00369     5/8     196   217 ..     1    24 []     5.3       93
SM00369     6/8     218   241 ..     1    24 []    30.4  0.00025
SM00369     7/8     242   265 ..     1    24 []     5.8       82
SM00369     8/8     266   289 ..     1    24 []    23.5    0.029
SM00409     1/1     360   444 ..     1    58 []    58.3  9.8e-13
SM00408     1/1     366   433 ..     1    56 []    41.2  1.4e-07
SM00406     1/1     370   428 ..     1    76 []    27.7   0.0016

Alignments of top-scoring domains:
SM00013: domain 1 of 1, from 46 to 80: score 28.5, E = 0.0009
                   *->qCPapCtCspdfgtaVdCsgrgLttlevPldlPadttl<-*
                       CP  C Cs +  + V C +++L+  evP +++ +t+l   
    KIAA1580    46    TCPSVCSCS-NQFSKVICVRKNLR--EVPDGISTNTRL    80   

SM00369: domain 1 of 8, from 79 to 98: score 2.1, E = 2.3e+02
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                          r L+L+ Nq++ +  + F +   
    KIAA1580    79    ----RLLNLHENQIQIIKVNSFKH    98   

SM00369: domain 2 of 8, from 99 to 122: score 28.6, E = 0.00084
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++L+ L Ls+N+++++  gaF+g   
    KIAA1580    99    LRHLEILQLSRNHIRTIEIGAFNG    122  

SM00369: domain 3 of 8, from 123 to 146: score 21.4, E = 0.12
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L nL +L L +N+Lt++P+gaF     
    KIAA1580   123    LANLNTLELFDNRLTTIPNGAFVY    146  

SM00369: domain 4 of 8, from 147 to 170: score 27.7, E = 0.0016
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++L+eL L nN ++s+P+ aF+    
    KIAA1580   147    LSKLKELWLRNNPIESIPSYAFNR    170  

SM00369: domain 5 of 8, from 196 to 217: score 5.3, E = 93
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L+nLr L+L   +L+++P+ +  +   
    KIAA1580   196    LSNLRYLNLAMCNLREIPNLT--P    217  

SM00369: domain 6 of 8, from 218 to 241: score 30.4, E = 0.00025
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L +L eLdLs+N+L+++ pg Fqg   
    KIAA1580   218    LIKLDELDLSGNHLSAIRPGSFQG    241  

SM00369: domain 7 of 8, from 242 to 265: score 5.8, E = 82
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L +L++L     q++ + ++aF++   
    KIAA1580   242    LMHLQKLWMIQSQIQVIERNAFDN    265  

SM00369: domain 8 of 8, from 266 to 289: score 23.5, E = 0.029
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L +L e +L +N+Lt LP+++F +   
    KIAA1580   266    LQSLVEINLAHNNLTLLPHDLFTP    289  

SM00409: domain 1 of 1, from 360 to 444: score 58.3, E = 9.8e-13
                   *->pp.vtvkeGesvtLtC.as....titWy...................
                      p ++ v eG  ++L+C+as++ ++++W +++++  +++  + +    
    KIAA1580   360    PAdLNVTEGMAAELKCrAStsltSVSWItpngtvmthgaykvriavl 406  

                   ....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                   ++++L+++nvt++D+   G YtC+++++ g++++  ++tL V+   
    KIAA1580   407 sdgtLNFtNVTVQDT---GMYTCMVSnsVGNTTA--SATLNVT    444  

SM00408: domain 1 of 1, from 366 to 433: score 41.2, E = 1.4e-07
                   *->leGqsVtLtCpasgdpvpnItWlk..gkplp...........sgstL
                       eG +++L+C+as + + +++W+ ++g+ + ++  + +    s++tL
    KIAA1580   366    TEGMAAELKCRASTSLT-SVSWITpnGTVMThgaykvriavlSDGTL 411  

                   tiknvsleDsGlYtCvArNsvg<-*
                   +++nv++ D G+YtC ++Nsvg   
    KIAA1580   412 NFTNVTVQDTGMYTCMVSNSVG    433  

SM00406: domain 1 of 1, from 370 to 428: score 27.7, E = 0.0016
                   *->svtLsCkaSgftfyvsWvrqpPsstgkgkglewlgysykgRvtiskd
                       ++L C+aS++ + vsW+          +g    ++ yk R+ +  d
    KIAA1580   370    AAELKCRASTSLTSVSWITP--------NGTVMTHGAYKVRIAVLSD 408  

                   tltraskndvsLtisnLrpeDtgtYyCar<-*
                             +L ++n+++ Dtg+Y+C +   
    KIAA1580   409 G---------TLNFTNVTVQDTGMYTCMV    428  

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