hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07045732/chunk_1/iprscan-20080502-07045732.nocrc
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Query sequence: KIAA1587
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01454.9.ls MAGE family                                    469.4     4e-138   2
PF01454.9.fs MAGE family                                    466.1   4.1e-137   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01454.9.fs   1/3     532   702 ..     1   219 []   303.7  3.1e-88
PF01454.9.ls   1/2     532   702 ..     1   219 []   305.5  8.9e-89
PF01454.9.fs   2/3     786   906 ..     1   165 [.   114.0  4.1e-31
PF01454.9.ls   2/2     786   948 ..     1   219 []   163.9  3.8e-46
PF01454.9.fs   3/3     915   948 ..   183   219 .]    48.4  7.2e-13

Alignments of top-scoring domains:
PF01454.9.fs: domain 1 of 3, from 532 to 702: score 303.7, E = 3.1e-88
                   *->LVrflLskyqsKespItraeilkiVikeyknhFLpeIfkrAserLel
                      L +flL+k+qsK  pI+ +e+ +++ key+n+F peI++rA+++Le+
    KIAA1587   532    LLQFLLVKDQSKY-PIRESEMREYIVKEYRNQF-PEILRRAAAHLEC 576  

                   vFGleLkEvdpkrrskkatsqsqsssgshsYILvskLplsyrivlflwqs
                   +F +eL+E+dp                +h+YIL++kL++++         
    KIAA1587   577 IFRFELRELDPE---------------AHTYILLNKLGPVP--------- 602  

                   sykdgselgddeglPktsesstdtdqlavktGLLmviLgvIfmnGncasE
                       +  l++++  P              k+GLLm+iLg If+nGn a E
    KIAA1587   603 ---FEG-LEESPNGP--------------KMGLLMMILGQIFLNGNQAKE 634  

                   eeLwefLnrlGlydgeehfifGldprkLitedlVkqkYLveyrqvpnsdP
                   +e+we+L+r+G++ +++ +ifG +p++L+  ++V+q+YL  yr+v ++ P
    KIAA1587   635 AEIWEMLWRMGVQRERRLSIFG-NPKRLLSVEFVWQRYL-DYRPVTDCKP 682  

                   peyeFlWslGpRAyaEtskmkV<-*
                   +eyeF+W  GpR+++Et+kmk+   
    KIAA1587   683 VEYEFFW--GPRSHLETTKMKI    702  

PF01454.9.ls: domain 1 of 2, from 532 to 702: score 305.5, E = 8.9e-89
                   *->LVrflLskyqsKespItraeilkiVikeyknhFLpeIfkrAserLel
                      L +flL+k+qsK  pI+ +e+ +++ key+n+F peI++rA+++Le+
    KIAA1587   532    LLQFLLVKDQSKY-PIRESEMREYIVKEYRNQF-PEILRRAAAHLEC 576  

                   vFGleLkEvdpkrrskkatsqsqsssgshsYILvskLplsyrivlflwqs
                   +F +eL+E+dp                +h+YIL++kL++++         
    KIAA1587   577 IFRFELRELDPE---------------AHTYILLNKLGPVP--------- 602  

                   sykdgselgddeglPktsesstdtdqlavktGLLmviLgvIfmnGncasE
                       +  l++++  P              k+GLLm+iLg If+nGn a E
    KIAA1587   603 ---FEG-LEESPNGP--------------KMGLLMMILGQIFLNGNQAKE 634  

                   eeLwefLnrlGlydgeehfifGldprkLitedlVkqkYLveyrqvpnsdP
                   +e+we+L+r+G++ +++ +ifG +p++L+  ++V+q+YL  yr+v ++ P
    KIAA1587   635 AEIWEMLWRMGVQRERRLSIFG-NPKRLLSVEFVWQRYL-DYRPVTDCKP 682  

                   peyeFlWslGpRAyaEtskmkV<-*
                   +eyeF+W  GpR+++Et+kmk+   
    KIAA1587   683 VEYEFFW--GPRSHLETTKMKI    702  

PF01454.9.fs: domain 2 of 3, from 786 to 906: score 114.0, E = 4.1e-31
                   *->LVrflLskyqsKespItraeilkiVikeyknhFLpeIfkrAserLel
                      LV+++L+ +  K  pI +++il ++ +e    F p++++rA+++L  
    KIAA1587   786    LVQLFLLMDSTKL-PIPKKGILYYIGRECSKVF-PDLLNRAARTLNH 830  

                   vFGleLkEvdpkrrskkatsqsqsssgshsYILvskLplsyrivlflwqs
                   v+G eL+ +dp+               +hsY L +  ++++         
    KIAA1587   831 VYGTELVVLDPR---------------NHSYTLYNRREMEE--------- 856  

                   sykdgselgddeglPktsesstdtdqlavktGLLmviLgvIfmnGncasE
                       ++ + d++ +P               + +Lm +L+ If+ Gn+a+E
    KIAA1587   857 ---TEE-IVDSPNRP--------------GNNFLMQVLSFIFIMGNHARE 888  

                   eeLwefLnrlGlydgeeh<-*
                   + +w fL+ lG+++g++h   
    KIAA1587   889 SAVWAFLRGLGVQAGRKH    906  

PF01454.9.ls: domain 2 of 2, from 786 to 948: score 163.9, E = 3.8e-46
                   *->LVrflLskyqsKespItraeilkiVikeyknhFLpeIfkrAserLel
                      LV+++L+ +  K  pI +++il ++ +e    F p++++rA+++L  
    KIAA1587   786    LVQLFLLMDSTKL-PIPKKGILYYIGRECSKVF-PDLLNRAARTLNH 830  

                   vFGleLkEvdpkrrskkatsqsqsssgshsYILvskLplsyrivlflwqs
                   v+G eL+ +dp+               +hsY L +  ++++         
    KIAA1587   831 VYGTELVVLDPR---------------NHSYTLYNRREMEE--------- 856  

                   sykdgselgddeglPktsesstdtdqlavktGLLmviLgvIfmnGncasE
                       ++ + d++ +P               + +Lm +L+ If+ Gn+a+E
    KIAA1587   857 ---TEE-IVDSPNRP--------------GNNFLMQVLSFIFIMGNHARE 888  

                   eeLwefLnrlGlydgeehfifGldprkLitedlVkqkYLveyrqvpnsdP
                   + +w fL+ lG+++g++h         +it +   q+Y++  r vp+sdP
    KIAA1587   889 SAVWAFLRGLGVQAGRKH---------VITCRYLSQRYIDSLR-VPDSDP 928  

                   peyeFlWslGpRAyaEtskmkV<-*
                   ++yeF+W  GpRA +Etskmk    
    KIAA1587   929 VQYEFVW--GPRARLETSKMKA    948  

PF01454.9.fs: domain 3 of 3, from 915 to 948: score 48.4, E = 7.2e-13
                   *->qkYLveyrqvpnsdPpeyeFlWslGpRAyaEtskmkV<-*
                      q+Y++  r vp+sdP++yeF+W  GpRA +Etskmk    
    KIAA1587   915    QRYIDSLR-VPDSDPVQYEFVW--GPRARLETSKMKA    948  

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