hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07100594/chunk_1/iprscan-20080502-07100594.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1590 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00129 592.7 1.3e-173 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00129 1/1 2 367 .. 1 404 [] 592.7 1.3e-173 Alignments of top-scoring domains: SM00129: domain 1 of 1, from 2 to 367: score 592.7, E = 1.3e-173 *->kgnIrVavRvdrdRPlnkrEksekakeespsvvtv.....tvtvn.. +++VavRv RP n+rEk+ + ++ +++++++++t+t+ + KIAA1590 2 MASVKVAVRV---RPMNRREKDLE----AKFIIQMeksktTITNLki 41 ...............FtFDkVFWry..d.vddpsasQedVFeevaaPLvd +++++++++++++++Ft+D++F y+ d+ +++++sQe+VF++++ +v KIAA1590 42 peggtgdsgrertktFTYDFSF--YsaDtKSPDYVSQEMVFKTLGTDVVK 89 saldGYNvaTIFAYGQTGSGKTyTMsGtptdpgilsndladitpdepGiI sa++GYN+ ++FAYGQTGSGK+yTM+G + + G+I KIAA1590 90 SAFEGYNA-CVFAYGQTGSGKSYTMMGNS---------------GDSGLI 123 PRaledlFekide........fsVkvSylEIYNEkirDLLspspenSksr PR++e lF +i+e+++ ++ +f +vSylEIYNE++rDLL +++ KIAA1590 124 PRICEGLFSRINEttrwdeasFRTEVSYLEIYNERVRDLLRRKSSK---- 169 GkhakqsskkkLrirEdkngnrhdapkLtrlrgqggvyVvGLtevsVsSa +Lr+rE+++ g+yV++L+ + V ++ KIAA1590 170 --------TFNLRVREHPK---------------EGPYVEDLSKHLVQNY 196 eevlellerGnknRtvaaTkmNeeSSRSHaiFtitleqkeklepiadekt +v+el++ Gn nRt+aaT mN+ SSRSHaiFti+ +q+ KIAA1590 197 GDVEELMDAGNINRTTAATGMNDVSSRSHAIFTIKFTQA----------- 235 esstnegteqiksskLnLVDLAGSERaskTgseaeGdRLkEaqnINkSLl +++++ ++sk++LVDLAGSERa+ Tg a+G+RLkE++nINkSL KIAA1590 236 --KFDSEMPCETVSKIHLVDLAGSERADATG--ATGVRLKEGGNINKSLV 281 aLGnVInALaddshdsaes.eatkqaggkssHIPYRDSKLTrLLQdSLGG +LGnVI+ALad + ++a+ a++k+ ++PYRDS+LT+LL+dSLGG KIAA1590 282 TLGNVISALAD-----LSQdAANTLAKKKQVFVPYRDSVLTWLLKDSLGG 326 NsKTlMIanvSPsssnyeETlsTLrFAsRaksIknkpavne<-* NsKT+MIa++SP++ ny+ETlsTLr+A+Rak+I nkp++ne KIAA1590 327 NSKTIMIATISPADVNYGETLSTLRYANRAKNIINKPTINE 367 //