hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07150094/chunk_1/iprscan-20080502-07150094.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1593 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00632.15.ls HECT-domain (ubiquitin-transferase) 511.5 8.8e-151 1 PF00632.15.fs HECT-domain (ubiquitin-transferase) 509.6 3.3e-150 1 PF00415.9.fs Regulator of chromosome condensation (RCC1) 115.8 1e-32 5 PF00415.9.ls Regulator of chromosome condensation (RCC1) 103.6 5.4e-28 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00415.9.ls 1/4 53 101 .. 1 68 [] 44.0 4.6e-10 PF00415.9.fs 2/5 53 101 .. 1 68 [] 43.3 7.6e-12 PF00415.9.fs 3/5 104 153 .. 1 68 [] 33.7 4.4e-09 PF00415.9.ls 2/4 104 153 .. 1 68 [] 35.4 1.8e-07 PF00632.15.fs 1/1 655 953 .] 1 351 [] 509.6 3.3e-150 PF00632.15.ls 1/1 655 953 .] 1 351 [] 511.5 8.8e-151 Alignments of top-scoring domains: PF00415.9.ls: domain 1 of 4, from 53 to 101: score 44.0, E = 4.6e-10 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr V+ +G+ + +GqLGlg++ ++ +P+l+ KIAA1593 53 --EVFCWGQ--NKYGQLGLGTDCKKQT----------SPQLL----- 80 ssslsekVvsvasGgqHtval<-* +s l ++ +va+Gg H ++l KIAA1593 81 KSLLGIPFMQVAAGGAHSFVL 101 PF00415.9.fs: domain 2 of 5, from 53 to 101: score 43.3, E = 7.6e-12 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr V+ +G+ + +GqLGlg++ ++ +P+l+ KIAA1593 53 --EVFCWGQ--NKYGQLGLGTDCKKQT----------SPQLL----- 80 ssslsekVvsvasGgqHtval<-* +s l ++ +va+Gg H ++l KIAA1593 81 KSLLGIPFMQVAAGGAHSFVL 101 PF00415.9.fs: domain 3 of 5, from 104 to 153: score 33.7, E = 4.4e-09 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr +G ++++G+ + GqLGl e + vP l+ KIAA1593 104 SGAIFGWGR--NKFGQLGLNDENDRY-----------VPNLL----- 132 ssslsekVvsvasGgqHtval<-* +s +s k v +G +Ht+al KIAA1593 133 KSLRSQKIVYICCGEDHTAAL 153 PF00415.9.ls: domain 2 of 4, from 104 to 153: score 35.4, E = 1.8e-07 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr +G ++++G+ + GqLGl e + vP l+ KIAA1593 104 SGAIFGWGR--NKFGQLGLNDENDRY-----------VPNLL----- 132 ssslsekVvsvasGgqHtval<-* +s +s k v +G +Ht+al KIAA1593 133 KSLRSQKIVYICCGEDHTAAL 153 PF00632.15.fs: domain 1 of 1, from 655 to 953: score 509.6, E = 3.3e-150 *->tLlsrelfnPdygLFeysddtdvnesgyaedsytlqinPlssesnpe +L++rel++P+yg+F+y +eds+ ++++ + +e+ KIAA1593 655 LLIMRELLDPKYGMFRY-----------YEDSRLIWFSDKTFED--- 687 hlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkpvtleDlesvD +++F++iG+i+GlA+yn +++d++Fp+a+YKkLL +k+++l+Dl++++ KIAA1593 688 -SDLFHLIGVICGLAIYNCTIVDLHFPLALYKKLL--KKKPSLDDLKELM 734 PelynSLkwllendgdrhILLgsledveedLeLtFsveeessagfdpdas P++++S+++ll+++ d d+ee+++L+F++++e+ f KIAA1593 735 PDVGRSMQQLLDYPED---------DIEETFCLNFTITVEN---F----- 767 dfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeAFrk G t++ e L+ nG++++V+++N++e+V++yv+y++nk++ f+AF+ KIAA1593 768 --GATEVKE-LVLNGADTAVNKQNRQEFVDAYVDYIFNKSVASLFDAFHA 814 GFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkggYtedsp GF++v+++++L lF+p+EL+ ++ G+ + +D++ L++nTeYkg+Y++++p KIAA1593 815 GFHKVCGGKVLLLFQPNELQAMVIGNTN-YDWKELEKNTEYKGEYWAEHP 863 lktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgpGsnGppk tI+ FWev++e++ e++k++L+F TGs+R+P++G+k L+ KIAA1593 864 --TIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSLK--------- 902 FtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAIneeteG + I+ + gg++++LP++HTCFN+LdLP Y kE+Lr+kL++AI +++eG KIAA1593 903 LVIQST--GGGEEYLPVSHTCFNLLDLPKYTEKETLRSKLIQAI-DHNEG 949 Fgle<-* F+l KIAA1593 950 FSLI 953 PF00632.15.ls: domain 1 of 1, from 655 to 953: score 511.5, E = 8.8e-151 *->tLlsrelfnPdygLFeysddtdvnesgyaedsytlqinPlssesnpe +L++rel++P+yg+F+y +eds+ ++++ + +e+ KIAA1593 655 LLIMRELLDPKYGMFRY-----------YEDSRLIWFSDKTFED--- 687 hlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkpvtleDlesvD +++F++iG+i+GlA+yn +++d++Fp+a+YKkLL +k+++l+Dl++++ KIAA1593 688 -SDLFHLIGVICGLAIYNCTIVDLHFPLALYKKLL--KKKPSLDDLKELM 734 PelynSLkwllendgdrhILLgsledveedLeLtFsveeessagfdpdas P++++S+++ll+++ d d+ee+++L+F++++e+ f KIAA1593 735 PDVGRSMQQLLDYPED---------DIEETFCLNFTITVEN---F----- 767 dfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeAFrk G t++ e L+ nG++++V+++N++e+V++yv+y++nk++ f+AF+ KIAA1593 768 --GATEVKE-LVLNGADTAVNKQNRQEFVDAYVDYIFNKSVASLFDAFHA 814 GFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkggYtedsp GF++v+++++L lF+p+EL+ ++ G+ + +D++ L++nTeYkg+Y++++p KIAA1593 815 GFHKVCGGKVLLLFQPNELQAMVIGNTN-YDWKELEKNTEYKGEYWAEHP 863 lktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgpGsnGppk tI+ FWev++e++ e++k++L+F TGs+R+P++G+k L+ KIAA1593 864 --TIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSLK--------- 902 FtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAIneeteG + I+ + gg++++LP++HTCFN+LdLP Y kE+Lr+kL++AI +++eG KIAA1593 903 LVIQST--GGGEEYLPVSHTCFNLLDLPKYTEKETLRSKLIQAI-DHNEG 949 Fgle<-* F+l KIAA1593 950 FSLI 953 //