hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07164285/chunk_1/iprscan-20080502-07164285.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1594 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00443.19.fs Ubiquitin carboxyl-terminal hydrolase 337.9 2.3e-108 1 PF00443.19.ls Ubiquitin carboxyl-terminal hydrolase 339.8 4.1e-99 1 PF02809.10.ls Ubiquitin interaction motif 55.2 2e-13 3 PF02809.10.fs Ubiquitin interaction motif 49.2 8.4e-12 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00443.19.fs 1/1 290 900 .. 1 318 [] 337.9 2.3e-108 PF00443.19.ls 1/1 290 900 .. 1 318 [] 339.8 4.1e-99 PF02809.10.ls 1/3 655 672 .. 1 18 [] 10.4 1.1 PF02809.10.fs 1/3 655 672 .. 1 18 [] 8.4 0.59 PF02809.10.fs 2/3 757 774 .. 1 18 [] 18.8 0.001 PF02809.10.ls 2/3 757 774 .. 1 18 [] 20.8 0.0044 PF02809.10.ls 3/3 779 796 .. 1 18 [] 23.9 0.00051 PF02809.10.fs 3/3 779 796 .. 1 18 [] 21.9 0.00015 Alignments of top-scoring domains: PF00443.19.fs: domain 1 of 1, from 290 to 900: score 337.9, E = 2.3e-108 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl +++ G+ NlGNTCYmN++LQ+Lfs +++++++l++ + KIAA1594 290 QQLQGFSNLGNTCYMNAILQSLFSLQSFANDLLKQ----------GI 326 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy ++k++ l+al++ f++l+ +++ + + +++ +lk++k+ ++ +e fsgy KIAA1594 327 PWKKIPLNALIRRFAHLLVKkDICNSETKKDLLKKVKNAISATAERFSGY 376 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxx xxxxxx mQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpd.kaa.eawknh mQ+DAhEFl ++Ld+L ed++++nk ++tep ++ +++ ++ + KIAA1594 377 MQNDAHEFLSQCLDQLKEDMEKLNKTWKTEP-------VsGEEnSPDISA 419 RF xxxxxxxxxxxxxxxxxx ltrnesiitdlFqGqlks................................ ++ ++++ +++++++ ++ ++ +++ +++++ ++ + + ++++++ + KIAA1594 420 TRAYTCPVITNLEFEVQHsiickacgeiipkreqfndlsidlprrkkplp 469 RF xxxxxxxxxxxxxxxxxxx ...............................klkikrLPpvLiihLKRFs +++ +++ + + ++ + +++++++++ ++k+ rLP vLi+hLKR+s KIAA1594 470 prsiqdsldlffraeeleyscekcggkcalvRHKFNRLPRVLILHLKRYS 519 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xx xxxxxx yngetglnkKiddkVefPleLdlssycnaelkekevlrkd.ek.ieklke +n ++ln+Ki ++V +P+ L lss+c++++k+ ++l+++ ++ i+++++ KIAA1594 520 FNVALSLNNKIGQQVIIPRYLTLSSHCTENTKPPFTLGWSaHMaISRPLK 569 RF xxxx erqr.............................................. +q+ ++ +++++++++ + +++++ +++++++ +++ +++ KIAA1594 570 ASQMvnscitspstpskkftfksksslalcldsdsedelkrsvalsqrlc 619 RF .................................................. + ++++++++ +++++ + ++++++ ++++ ++ ++++ + ++ KIAA1594 620 emlgneqqqedlekdsklcpiepdkselensgfdrmseeellaavleisk 669 RF .................................................. ++ +++ +++++++++++++++ +++ ++ ++++++ +++++++ ++ + KIAA1594 670 rdaspslshedddkptsspdtgfaeddiqempenpdtmetekpktiteld 719 RF .................................................. + + ++ +++ +++++++++++++++ + ++ + ++++++++ ++ + KIAA1594 720 pasfteitkdcdenkenktpegsqgevdwlqqydmerereeqelqqalaq 769 RF xxxxx xx ..........................................dedgn.ne + ++++ +++++++ ++ ++ + ++ +++ + ++++++++ed +++e KIAA1594 770 slqeqeaweqkedddlkratelslqefnnsfvdalgsdedsgNEDVFdME 819 RF xxx xxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx .eep.eeee.dneegenpptkYeLyaVvvHsGsslssGHYiayikkkken +e + ee ++n+e++n p+ Y+L++Vv+H Gs++ssGHYi++++ ++++ KIAA1594 820 yTEAeAEELkRNAETGNLPHSYRLISVVSHIGSTSSSGHYISDVY-DIKK 868 RF xxxxxxxxxxxxxxxxxxxxx xxxxxxxxxx gkWykfDDekVsevteeevle.rsssAYiLFY<-* + W++++D Vs ++e +v+++r +s+Yi FY KIAA1594 869 QAWFTYNDLEVSKIQEAAVQSdRDRSGYIFFY 900 PF00443.19.ls: domain 1 of 1, from 290 to 900: score 339.8, E = 4.1e-99 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl +++ G+ NlGNTCYmN++LQ+Lfs +++++++l++ + KIAA1594 290 QQLQGFSNLGNTCYMNAILQSLFSLQSFANDLLKQ----------GI 326 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy ++k++ l+al++ f++l+ +++ + + +++ +lk++k+ ++ +e fsgy KIAA1594 327 PWKKIPLNALIRRFAHLLVKkDICNSETKKDLLKKVKNAISATAERFSGY 376 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxx xxxxxx mQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpd.kaa.eawknh mQ+DAhEFl ++Ld+L ed++++nk ++tep ++ +++ ++ + KIAA1594 377 MQNDAHEFLSQCLDQLKEDMEKLNKTWKTEP-------VsGEEnSPDISA 419 RF xxxxxxxxxxxxxxxxxx ltrnesiitdlFqGqlks................................ ++ ++++ +++++++ ++ ++ +++ +++++ ++ + + ++++++ + KIAA1594 420 TRAYTCPVITNLEFEVQHsiickacgeiipkreqfndlsidlprrkkplp 469 RF xxxxxxxxxxxxxxxxxxx ...............................klkikrLPpvLiihLKRFs +++ +++ + + ++ + +++++++++ ++k+ rLP vLi+hLKR+s KIAA1594 470 prsiqdsldlffraeeleyscekcggkcalvRHKFNRLPRVLILHLKRYS 519 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xx xxxxxx yngetglnkKiddkVefPleLdlssycnaelkekevlrkd.ek.ieklke +n ++ln+Ki ++V +P+ L lss+c++++k+ ++l+++ ++ i+++++ KIAA1594 520 FNVALSLNNKIGQQVIIPRYLTLSSHCTENTKPPFTLGWSaHMaISRPLK 569 RF xxxx erqr.............................................. +q+ ++ +++++++++ + +++++ +++++++ +++ +++ KIAA1594 570 ASQMvnscitspstpskkftfksksslalcldsdsedelkrsvalsqrlc 619 RF .................................................. + ++++++++ +++++ + ++++++ ++++ ++ ++++ + ++ KIAA1594 620 emlgneqqqedlekdsklcpiepdkselensgfdrmseeellaavleisk 669 RF .................................................. ++ +++ +++++++++++++++ +++ ++ ++++++ +++++++ ++ + KIAA1594 670 rdaspslshedddkptsspdtgfaeddiqempenpdtmetekpktiteld 719 RF .................................................. + + ++ +++ +++++++++++++++ + ++ + ++++++++ ++ + KIAA1594 720 pasfteitkdcdenkenktpegsqgevdwlqqydmerereeqelqqalaq 769 RF xxxxx xx ..........................................dedgn.ne + ++++ +++++++ ++ ++ + ++ +++ + ++++++++ed +++e KIAA1594 770 slqeqeaweqkedddlkratelslqefnnsfvdalgsdedsgNEDVFdME 819 RF xxx xxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx .eep.eeee.dneegenpptkYeLyaVvvHsGsslssGHYiayikkkken +e + ee ++n+e++n p+ Y+L++Vv+H Gs++ssGHYi++++ ++++ KIAA1594 820 yTEAeAEELkRNAETGNLPHSYRLISVVSHIGSTSSSGHYISDVY-DIKK 868 RF xxxxxxxxxxxxxxxxxxxxx xxxxxxxxxx gkWykfDDekVsevteeevle.rsssAYiLFY<-* + W++++D Vs ++e +v+++r +s+Yi FY KIAA1594 869 QAWFTYNDLEVSKIQEAAVQSdRDRSGYIFFY 900 PF02809.10.ls: domain 1 of 3, from 655 to 672: score 10.4, E = 1.1 *->mdEEedLqlALalSlqea<-* m+EEe L+ L+ S +a KIAA1594 655 MSEEELLAAVLEISKRDA 672 PF02809.10.fs: domain 1 of 3, from 655 to 672: score 8.4, E = 0.59 *->mdEEedLqlALalSlqea<-* m+EEe L+ L+ S +a KIAA1594 655 MSEEELLAAVLEISKRDA 672 PF02809.10.fs: domain 2 of 3, from 757 to 774: score 18.8, E = 0.001 *->mdEEedLqlALalSlqea<-* + EE++Lq+ALa+Slqe+ KIAA1594 757 EREEQELQQALAQSLQEQ 774 PF02809.10.ls: domain 2 of 3, from 757 to 774: score 20.8, E = 0.0044 *->mdEEedLqlALalSlqea<-* + EE++Lq+ALa+Slqe+ KIAA1594 757 EREEQELQQALAQSLQEQ 774 PF02809.10.ls: domain 3 of 3, from 779 to 796: score 23.9, E = 0.00051 *->mdEEedLqlALalSlqea<-* +E++dL++A +lSlqe+ KIAA1594 779 QKEDDDLKRATELSLQEF 796 PF02809.10.fs: domain 3 of 3, from 779 to 796: score 21.9, E = 0.00015 *->mdEEedLqlALalSlqea<-* +E++dL++A +lSlqe+ KIAA1594 779 QKEDDDLKRATELSLQEF 796 //