hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07182539/chunk_1/iprscan-20080502-07182539.nocrc
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Query sequence: KIAA1595
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF00271.21.fs Helicase conserved C-terminal domain          97.4      8e-28   1
PF00271.21.ls Helicase conserved C-terminal domain          99.4      1e-26   1
PF00270.19.fs DEAD/DEAH box helicase                        83.9    4.3e-23   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00270.19.fs   1/1       7    83 ..   125   213 .]    83.9  4.3e-23
PF00271.21.fs   1/1     159   234 ..     1    76 []    97.4    8e-28
PF00271.21.ls   1/1     159   234 ..     1    76 []    99.4    1e-26

Alignments of top-scoring domains:
PF00270.19.fs: domain 1 of 1, from 7 to 83: score 83.9, E = 4.3e-23
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxx    xxxxxxxxxxxxxxxxx
                   *->dIlvgTPgrLldlllkgrkregasld....lknlkllVlDEAhrlld
                      +I+v+TPgrL d++  +rk  ++ ld  + +++l +lVlDEA+rlld
    KIAA1595     7    NIIVATPGRLEDMF--RRKA-EG-LDlascVRSLDVLVLDEADRLLD 49   

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   
                   mkGfgedleeilrrlprpklrrlsqdlpnrqtllfSATlprnvedl<-*
                   m Gf++ +  il+ lp ++          r+t lfSAT +++ve+l   
    KIAA1595    50 M-GFEASINTILEFLP-KQ----------RRTGLFSATQTQEVENL    83   

PF00271.21.fs: domain 1 of 1, from 159 to 234: score 97.4, E = 8e-28
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                      +   +g+k+ ++hG +++ +R +i+ +Fr+  s +Lv+Tdv++rGiD
    KIAA1595   159    EVlVKGVKIMCIHG-KMKYKRNKIFMEFRKLQSGILVCTDVMARGID 204  

                   ipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   ip+vn+V +yd+p n + +++R+GR++R+G   
    KIAA1595   205 IPEVNWVLQYDPPSNASAFVHRCGRTARIG    234  

PF00271.21.ls: domain 1 of 1, from 159 to 234: score 99.4, E = 1e-26
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                      +   +g+k+ ++hG +++ +R +i+ +Fr+  s +Lv+Tdv++rGiD
    KIAA1595   159    EVlVKGVKIMCIHG-KMKYKRNKIFMEFRKLQSGILVCTDVMARGID 204  

                   ipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   ip+vn+V +yd+p n + +++R+GR++R+G   
    KIAA1595   205 IPEVNWVLQYDPPSNASAFVHRCGRTARIG    234  

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