hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07250144/chunk_1/iprscan-20080502-07250144.nocrc
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Query sequence: KIAA1599
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07002.6.ls Copine                                         329.0    7.4e-96   1
PF07002.6.fs Copine                                         327.1    2.8e-95   1
PF00168.20.fs C2 domain                                      127.8    1.9e-37   2
PF00168.20.ls C2 domain                                      130.0    6.3e-36   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00168.20.ls   1/2      40   131 ..     1    88 []    59.3  1.1e-14
PF00168.20.fs   1/2      44   131 ..     6    88 .]    58.5  7.5e-17
PF00168.20.ls   2/2     193   283 ..     1    88 []    70.6  4.6e-18
PF00168.20.fs   2/2     198   283 ..     6    88 .]    69.3  4.8e-20
PF07002.6.fs   1/1     362   506 ..     1   160 []   327.1  2.8e-95
PF07002.6.ls   1/1     362   506 ..     1   160 []   329.0  7.4e-96

Alignments of top-scoring domains:
PF00168.20.ls: domain 1 of 2, from 40 to 131: score 59.3, E = 1.1e-14
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qk..kkTkvik
                      +++tv +++nL  kD +++ksDP +++y  g++ ++ ++  +T+vi+
    KIAA1599    40    VEITV-SCRNLLDKD-MFSKSDPLCVMYTQGMENKqWRefGRTEVID 84   

                   ktlNPvWNEtFtFevpppdlqetLeieVyDydrfgr....ddflGevs<-
                   +tlNP +  +F ++  +++ q+ L++ +yD d+++ + +++dflG++   
    KIAA1599    85 NTLNPDFVRKFIVDYFFEEKQN-LRFDLYDVDSKSPdlskHDFLGQAF   131  

                   *
                    
    KIAA1599     -   -    

PF00168.20.fs: domain 1 of 2, from 44 to 131: score 58.5, E = 7.5e-17
                   *->ieAknLppkDkkngksDPYVkvylggdkkd.qk..kkTkvikktlNP
                      ++++nL  kD +++ksDP +++y  g++ ++ ++  +T+vi++tlNP
    KIAA1599    44    VSCRNLLDKD-MFSKSDPLCVMYTQGMENKqWRefGRTEVIDNTLNP 89   

                   vWNEtFtFevpppdlqetLeieVyDydrfgr....ddflGevs<-*
                    +  +F ++  +++ q+ L++ +yD d+++ + +++dflG++    
    KIAA1599    90 DFVRKFIVDYFFEEKQN-LRFDLYDVDSKSPdlskHDFLGQAF    131  

PF00168.20.ls: domain 2 of 2, from 193 to 283: score 70.6, E = 4.6e-18
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqk...kkTkvik
                      +    ++A+ L +kD ++gksDP+ ++y  ++++ + +  +kT+v k
    KIAA1599   193    VATMQFCANKLDKKD-FFGKSDPFLVFYRSNEDG-TFticHKTEVMK 237  

                   ktlNPvWN.EtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<-*
                   +tlNPvW + +  +   ++   ++t+++eVyD+dr+g++df+Ge++   
    KIAA1599   238 NTLNPVWQtFSIPVRALCNGDYDrTIKVEVYDWDRDGSHDFIGEFT    283  

PF00168.20.fs: domain 2 of 2, from 198 to 283: score 69.3, E = 4.8e-20
                   *->ieAknLppkDkkngksDPYVkvylggdkkdqk...kkTkvikktlNP
                      ++A+ L +kD ++gksDP+ ++y  ++++ + +  +kT+v k+tlNP
    KIAA1599   198    FCANKLDKKD-FFGKSDPFLVFYRSNEDG-TFticHKTEVMKNTLNP 242  

                   vWN.EtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<-*
                   vW + +  +   ++   ++t+++eVyD+dr+g++df+Ge++   
    KIAA1599   243 VWQtFSIPVRALCNGDYDrTIKVEVYDWDRDGSHDFIGEFT    283  

PF07002.6.fs: domain 1 of 1, from 362 to 506: score 327.1, E = 2.8e-95
                   *->SLHyIsprqpNpYeqAIravGeiLqdYDsDklfPAfGFGAklPpdys
                      SLHy+sp+q+N+Y+ A++avGei+q+YDsDk+fPA+GFGAklPpd++
    KIAA1599   362    SLHYMSPYQLNAYALALTAVGEIIQHYDSDKMFPALGFGAKLPPDGR 408  

                   VsHdedvFpLnfnpedpeCnGleGVleaYrealpnvqLsGPTnFaPiIna
                   VsH+   FpLn+n+e+p+C+G++G+leaY++ l++vqL+GPTnFaP++ +
    KIAA1599   409 VSHE---FPLNGNQENPSCCGIDGILEAYHRSLRTVQLYGPTNFAPVVTH 455  

                   aariAeasstqkggqYhVLlIiTDGqvTrsvDteGLSpDmkeTidAIVsA
                   +ar A+a   q+g+qY+VLlIiTDG+++          Dm++T++AIV+A
    KIAA1599   456 VARNAAA--VQDGSQYSVLLIITDGVIS----------DMAQTKEAIVNA 493  

                   SdlPLSIIiVGVG<-*
                   ++lP+SIIiVGVG   
    KIAA1599   494 AKLPMSIIIVGVG    506  

PF07002.6.ls: domain 1 of 1, from 362 to 506: score 329.0, E = 7.4e-96
                   *->SLHyIsprqpNpYeqAIravGeiLqdYDsDklfPAfGFGAklPpdys
                      SLHy+sp+q+N+Y+ A++avGei+q+YDsDk+fPA+GFGAklPpd++
    KIAA1599   362    SLHYMSPYQLNAYALALTAVGEIIQHYDSDKMFPALGFGAKLPPDGR 408  

                   VsHdedvFpLnfnpedpeCnGleGVleaYrealpnvqLsGPTnFaPiIna
                   VsH+   FpLn+n+e+p+C+G++G+leaY++ l++vqL+GPTnFaP++ +
    KIAA1599   409 VSHE---FPLNGNQENPSCCGIDGILEAYHRSLRTVQLYGPTNFAPVVTH 455  

                   aariAeasstqkggqYhVLlIiTDGqvTrsvDteGLSpDmkeTidAIVsA
                   +ar A+a   q+g+qY+VLlIiTDG+++          Dm++T++AIV+A
    KIAA1599   456 VARNAAA--VQDGSQYSVLLIITDGVIS----------DMAQTKEAIVNA 493  

                   SdlPLSIIiVGVG<-*
                   ++lP+SIIiVGVG   
    KIAA1599   494 AKLPMSIIIVGVG    506  

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