# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj10035s1.fasta.huge -Q ../query/KIAA1600.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1600, 741 aa
 vs ./tmplib.25089 library

1986764 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.4640+/-0.00463; mu= 12.1801+/- 0.316
 mean_var=90.9998+/-21.644, 0's: 0 Z-trim: 1  B-trim: 0 in 0/40
 Lambda= 0.134448

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1759  ( 983 res)   fh22011s1                   ( 983)  141 38.0  0.0054


>>KIAA1759  ( 983 res)   fh22011s1                        (983 aa)
 initn: 288 init1: 128 opt: 141  Z-score: 145.6  bits: 38.0 E(): 0.0054
Smith-Waterman score: 289;  23.366% identity (50.297% similar) in 505 aa overlap (2-489:51-454)

                                            10        20           
KIAA16                              DFVYHWKAITHYYIETSDDKAP--VTD-TNI
                                     :  ::. ...   . .   ::  . : . .
KIAA17 LASRGPGHRIPQGANLQTPVMADPETCLMVFKNHWSQVVRILERQGPRAAPGGADDLSAV
               30        40        50        60        70        80

       30        40        50          60          70        80    
KIAA16 PSHLEQMLDILVQEENERESGETGP--CMEYLLHHKILETLYT--LGKADCPPGMKQ---
        .:  ::: .:. :.    :. :::   .:. ::. .:  . :  :   .   :...   
KIAA17 RNHTYQMLTLLA-EDRAVPSAPTGPGPLLEFALHEDLLTRVLTWQLQWDELGDGVEERRA
               90        100       110       120       130         

              90       100       110        120        130         
KIAA16 QVLVFYTKLLGRIRQPLLPHINVHRPVQKLIRLCGE-VLATPTENEE-IQFLCIVCAKLK
       . : ..  :... ::::: :  :.. .  :.  ::. : ..:. .:  . .:  .:. . 
KIAA17 EQLKLFEMLVSEARQPLLRHGPVREALLTLLDACGRPVPSSPALDEGLVLLLSQLCVCVA
     140       150       160       170       180       190         

     140       150       160       170       180       190         
KIAA16 QDPYLVNFFLENKMKSLASKGVPNVISEDTLKGQDSLSTDTGQSRQPEELSGATGMEQTE
       :.: :..:::                                   ::    ::.      
KIAA17 QEPSLLEFFL-----------------------------------QPPPEPGAA------
     200                                          210              

     200       210       220       230       240       250         
KIAA16 LEDEPPHQMDHLSTSLDNLSVTSLPEASVVCPNQDYNLVNSLLNLTRSPDGRIAVKACEG
            :. .                            : . :. ...  .: .. .: ..
KIAA17 -----PRLL----------------------------LFSRLVPFVHR-EGTLGQQARDA
           220                                   230        240    

     260         270       280       290       300        310      
KIAA16 LMLLVSLPE--PAAAKCLTQSTCLCELLTDRLASLYKALPQSVD-PLDIETVEAINWGLD
       :.::..:    :.... ... . .: .:.  :..::..::.... : :       .:   
KIAA17 LLLLMALSAGSPTVGRYIADHSYFCPVLATGLSALYSSLPRKIEVPGD-------DWHC-
          250       260       270       280       290              

        320       330       340       350       360       370      
KIAA16 SYSHKEDASAFPGKRALISFLSWFDYCDQLIKEAQKTAAVALAKAVHERFFIGVMEPQLM
          ..::  . :   ::  :.: ...:. .:. :.  .   :.  .:. :.. :: : : 
KIAA17 --LRREDWLGVP---ALALFMSSLEFCNAVIQVAHPLVQKQLVDYIHNGFLVPVMGPALH
          300          310       320       330       340       350 

        380       390       400       410       420         430    
KIAA16 QTSEMGILTSTALLHRIVRQVTSDVLLQEMVFFILGEQREPETLAE--ISRHPLRHRLIE
       .::   ...::: :. ..:...  .::. .. :.: .... .:. .  ..:     ::  
KIAA17 KTSVEEMIASTAYLELFLRSISEPALLRTFLRFLLLHRHDTHTILDTLVARIGSNSRL--
             360       370       380       390       400           

          440       450       460       470       480       490    
KIAA16 HCDHISDEISIMTLRMFEHLLQKPNEHILYNLVLRNLEERNYTEYKPLCPEDKDVVENGL
        :        ...: .:. ::.   : .: .:::: :   :..  .   :  .::     
KIAA17 -C--------MVSLSLFRTLLNLSCEDVLLQLVLRYLVPCNHVMLSQK-PAVRDVDLYGR
      410               420       430       440        450         

          500       510       520       530       540       550    
KIAA16 IAGAVDLEEDPLFTDISPENTLPNQEWLSSSPPATPDHPKNDGKTEVHKIVNSFLCLVPD
                                                                   
KIAA17 AADKFLSLIPRCCRHHAPSPPRPEHASWARGPGSPSVDSSSVMTVPRPSTPSRLALFLRQ
     460       470       480       490       500       510         




741 residues in 1 query   sequences
1986764 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:09:42 2008 done: Thu Dec 18 15:09:43 2008
 Total Scan time:  0.570 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]