hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07364431/chunk_1/iprscan-20080502-07364431.nocrc
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Query sequence: KIAA1606
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02671.11.ls Paired amphipathic helix repeat                 96.8    6.2e-26   2
PF02671.11.fs Paired amphipathic helix repeat                 92.8    9.5e-25   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02671.11.fs   1/2     501   549 ..     1    47 []    45.6  2.8e-11
PF02671.11.ls   1/2     501   549 ..     1    47 []    47.6  3.9e-11
PF02671.11.fs   2/2     583   630 ..     1    47 []    47.2  1.1e-11
PF02671.11.ls   2/2     583   630 ..     1    47 []    49.2  1.3e-11

Alignments of top-scoring domains:
PF02671.11.fs: domain 1 of 2, from 501 to 549: score 45.6, E = 2.8e-11
                   *->pekYdsFlkiLnmykakridkd.....elfarvseLLkdhpdLlegF
                      p kY++Fl+++++++    ++++++  +l+++++ LL+d+p+Ll++F
    KIAA1606   501    PGKYEDFLQVIYEFES---STQrrtavDLYKSLQILLQDWPQLLKDF 544  

                   saFlp<-*
                   +aFl+   
    KIAA1606   545 AAFLL    549  

PF02671.11.ls: domain 1 of 2, from 501 to 549: score 47.6, E = 3.9e-11
                   *->pekYdsFlkiLnmykakridkd.....elfarvseLLkdhpdLlegF
                      p kY++Fl+++++++    ++++++  +l+++++ LL+d+p+Ll++F
    KIAA1606   501    PGKYEDFLQVIYEFES---STQrrtavDLYKSLQILLQDWPQLLKDF 544  

                   saFlp<-*
                   +aFl+   
    KIAA1606   545 AAFLL    549  

PF02671.11.fs: domain 2 of 2, from 583 to 630: score 47.2, E = 1.1e-11
                   *->pekYdsFlkiLnmykakri..dkdelfarvseLLkdhpdLlegFsaF
                      p+++++++k+L+  +a+++++ ++el++++++LLk+h++L+++Fs+F
    KIAA1606   583    PSHHQKIIKVLQG-CADCLpqEITELKTQMWQLLKGHDHLQDEFSIF 628  

                   lp<-*
                   +    
    KIAA1606   629 FD    630  

PF02671.11.ls: domain 2 of 2, from 583 to 630: score 49.2, E = 1.3e-11
                   *->pekYdsFlkiLnmykakri..dkdelfarvseLLkdhpdLlegFsaF
                      p+++++++k+L+  +a+++++ ++el++++++LLk+h++L+++Fs+F
    KIAA1606   583    PSHHQKIIKVLQG-CADCLpqEITELKTQMWQLLKGHDHLQDEFSIF 628  

                   lp<-*
                   +    
    KIAA1606   629 FD    630  

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