HUGE

Gene/Protein Characteristic Table for KIAA1609

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Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00876
Accession No. :	AB046829
Description :
HUGO Gene Name :
Clone Name :	fj11503 [Vector Info]
Flexi ORF Clone :	pF1KSDA1609
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 4683 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO
Ensembl ContigView (Add our DAS server as a DAS source)
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Features of the protein sequence	Description

Length: 473 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAF83926	1.7e-203	99.8	unnamed protein...	Homo sapiens
NP_065998	8e-203	99.3	hypothetical pr...	Homo sapiens
XP_001110946	4.4e-201	95.6	similar to CG51...	Macaca mulatta
BAG61921	1.2e-181	97.6	unnamed protein...	Homo sapiens
XP_546801	9e-162	78.2	similar to CG51...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR006571 285 429 PF07534 TLDc

HMMSmart IPR006571 260 429 SM00584 TLDc

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR006571	285	429	PF07534	TLDc
HMMSmart	IPR006571	260	429	SM00584	TLDc

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 219 RVPHVAIFLSVVICKGFLVLCSS 241 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	219	RVPHVAIFLSVVICKGFLVLCSS	241	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CTTTCCACCCTGAGCTTGTTC

Primer_r
: TTGAGTGTCCAGAGGCAGAAC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 16

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Primer_f	: CTTTCCACCCTGAGCTTGTTC
Primer_r	: TTGAGTGTCCAGAGGCAGAAC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1609

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information