HUGE

Gene/Protein Characteristic Table for KIAA1616

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK07220
Accession No. :	AB046836
Description :	Transient receptor potential cation channel subfamily M member 3.
HUGO Gene Name :	transient receptor potential cation channel, subfamily M, member 3 (TRPM3)
Clone Name :	fj13825 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 3957 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 901 bp

Genome contig ID gi89161216r_72239788
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
ATGAATTCATTCACTGAATATGTAATATTGAACTT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAAAAAACAGTGGACAGAACTAGCCTGAAATTGCCATG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 9 r 72339788 72424836 11 99.4 Perfect prediction

Features of the protein sequence	Description

Length: 1017 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EAW62509	99.9	transient recep...	Homo sapiens
EAW62506	99.9	transient recep...	Homo sapiens
CAM13090	99.9	transient recep...	Homo sapiens
EAW62511	99.9	transient recep...	Homo sapiens
EAW62507	99.9	transient recep...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR005821 214 422 PF00520 Ion transport

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR005821	214	422	PF00520	Ion transport

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 183 FWFYTLAYIGYLMLFNYIVLVKM 205 PRIMARY 23

2 250 YWNVTDLIAILLFSVGMILRLQD 272 PRIMARY 23

3 279 GRVIYCVNIIYWYIRLLDIFGVN 301 SECONDARY 23

4 312 GKMMIDMMYFVIIMLVVLMSFGV 334 PRIMARY 23

5 403 MACYLLVANILLVNLLIAVFNNT 425 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	183	FWFYTLAYIGYLMLFNYIVLVKM	205	PRIMARY	23
2	250	YWNVTDLIAILLFSVGMILRLQD	272	PRIMARY	23
3	279	GRVIYCVNIIYWYIRLLDIFGVN	301	SECONDARY	23
4	312	GKMMIDMMYFVIIMLVVLMSFGV	334	PRIMARY	23
5	403	MACYLLVANILLVNLLIAVFNNT	425	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CCACAGAAGGCTCAAGAATCC

Primer_r
: GCCTTAAATCCCCTGTGTCTG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 9

Experimental conditions

Panel name	: CCR
Primer_f	: CCACAGAAGGCTCAAGAATCC
Primer_r	: GCCTTAAATCCCCTGTGTCTG
PCR product length	: 198 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	901 bp
Genome contig ID	gi89161216r_72239788
PolyA signal sequence (None)	+--------+--------+----*----+---- ATGAATTCATTCACTGAATATGTAATATTGAACTT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAAAAAAACAGTGGACAGAACTAGCCTGAAATTGCCATG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	9	r	72339788	72424836	11	99.4	Perfect prediction

Gene/Protein Characteristic Table for KIAA1616

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information