hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07581691/chunk_1/iprscan-20080502-07581691.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1619 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01403.10.ls Sema domain 433.6 2.4e-127 1 PF01403.10.fs Sema domain 431.7 9.4e-127 1 PF01437.15.fs Plexin repeat 56.7 5.8e-18 1 PF01437.15.ls Plexin repeat 58.6 1.9e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01403.10.fs 1/1 82 515 .. 1 490 [] 431.7 9.4e-127 PF01403.10.ls 1/1 82 515 .. 1 490 [] 433.6 2.4e-127 PF01437.15.fs 1/1 533 589 .. 1 63 [] 56.7 5.8e-18 PF01437.15.ls 1/1 533 589 .. 1 63 [] 58.6 1.9e-14 Alignments of top-scoring domains: PF01403.10.fs: domain 1 of 1, from 82 to 515: score 431.7, E = 9.4e-127 *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpsspgeek ++tlll e++ rL+VGAr ++++L+ +d+ + + ++i+W++s +e KIAA1619 82 YSTLLLEEASARLLVGARGALFSLSANDIGDGAHKEIHWEAS--PEM 126 ceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtlinl ++C +kGk + +teC+N++r Lq+ n+thLy+CGT+aFqP+C i+ KIAA1619 127 QSKCHQKGKNN---QTECFNHVRFLQRLNSTHLYACGTHAFQPLCAAIDA 173 gdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrtgeL + F+l + +e+Gk +CPydP+ ++t++++ + g L KIAA1619 174 EA-------------FTL-PTSFEEGKEKCPYDPARGFTGLII-D--GGL 206 YsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFVdsy Y++t + F ++ p IrRs + + lrTe + +wln++ FV s+ KIAA1619 207 YTATRYE------FRSI-PDIRRSR-HPHSLRTEETPMHWLNDAEFVFSV 248 pipyvhsf...dDdkVYFFFrEtaveyspnc......gkaiysRVaRvCk ++ ++ + +dDdkVY FF+E+a+e + +++++++ ++RVaRvCk KIAA1619 249 LVRESKASavgDDDKVYYFFTERATEEG-SGsftqsrSSHRVARVARVCK 297 nDvGGrrylelnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptga +D GG+ l+ +kWT+FLKARL+C ip ++ L+ v l + KIAA1619 298 GDLGGKKILQ-KKWTSFLKARLIC------HIP--LYETLRGVCSLDAET 338 nlAreLgIserdpviYGVFt..tssnsiagpgdnSAVCaFsmsdIrqvFe + + +Y+ Ft +t+++ + SA+C + ++ I++vF KIAA1619 339 S---------SRTHFYAAFTlsTQWKTLEA----SAICRYDLAEIQAVF- 374 nGpfkhqssEgpnskwlpyrglkvPyPRPGqCpndssgp.nytStkdlPD Gp++++ +g++ +w +y+g vP+PRPG+C++ds + ++y S+ dlP KIAA1619 375 AGPYMEYQ-DGSR-RWGRYEG-GVPEPRPGSCITDSLRSqGYNSSQDLPS 421 dtlnfikshpLmdevvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGql +l f+k hpLm +v P +rPl+ +++ r+T+++ + V ++ G + KIAA1619 422 LVLDFVKLHPLMARPVVPTRGRPLLLKRNI--RYTHLTGT-PVTTPAGPT 468 YtVlFlGTddGtvlKkvvvlsrsss.syeevvleelqvfkdpriePvqnl Y+ lFlGT dG+++ k+vvl +s+ + ++ee+qvf+++ v+nl KIAA1619 469 YDLLFLGTADGWIH-KAVVL--GSGmH----IIEETQVFRES--QSVENL 509 eisskq<-* +is+ q KIAA1619 510 VISLLQ 515 PF01403.10.ls: domain 1 of 1, from 82 to 515: score 433.6, E = 2.4e-127 *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpsspgeek ++tlll e++ rL+VGAr ++++L+ +d+ + + ++i+W++s +e KIAA1619 82 YSTLLLEEASARLLVGARGALFSLSANDIGDGAHKEIHWEAS--PEM 126 ceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtlinl ++C +kGk + +teC+N++r Lq+ n+thLy+CGT+aFqP+C i+ KIAA1619 127 QSKCHQKGKNN---QTECFNHVRFLQRLNSTHLYACGTHAFQPLCAAIDA 173 gdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrtgeL + F+l + +e+Gk +CPydP+ ++t++++ + g L KIAA1619 174 EA-------------FTL-PTSFEEGKEKCPYDPARGFTGLII-D--GGL 206 YsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFVdsy Y++t + F ++ p IrRs + + lrTe + +wln++ FV s+ KIAA1619 207 YTATRYE------FRSI-PDIRRSR-HPHSLRTEETPMHWLNDAEFVFSV 248 pipyvhsf...dDdkVYFFFrEtaveyspnc......gkaiysRVaRvCk ++ ++ + +dDdkVY FF+E+a+e + +++++++ ++RVaRvCk KIAA1619 249 LVRESKASavgDDDKVYYFFTERATEEG-SGsftqsrSSHRVARVARVCK 297 nDvGGrrylelnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptga +D GG+ l+ +kWT+FLKARL+C ip ++ L+ v l + KIAA1619 298 GDLGGKKILQ-KKWTSFLKARLIC------HIP--LYETLRGVCSLDAET 338 nlAreLgIserdpviYGVFt..tssnsiagpgdnSAVCaFsmsdIrqvFe + + +Y+ Ft +t+++ + SA+C + ++ I++vF KIAA1619 339 S---------SRTHFYAAFTlsTQWKTLEA----SAICRYDLAEIQAVF- 374 nGpfkhqssEgpnskwlpyrglkvPyPRPGqCpndssgp.nytStkdlPD Gp++++ +g++ +w +y+g vP+PRPG+C++ds + ++y S+ dlP KIAA1619 375 AGPYMEYQ-DGSR-RWGRYEG-GVPEPRPGSCITDSLRSqGYNSSQDLPS 421 dtlnfikshpLmdevvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGql +l f+k hpLm +v P +rPl+ +++ r+T+++ + V ++ G + KIAA1619 422 LVLDFVKLHPLMARPVVPTRGRPLLLKRNI--RYTHLTGT-PVTTPAGPT 468 YtVlFlGTddGtvlKkvvvlsrsss.syeevvleelqvfkdpriePvqnl Y+ lFlGT dG+++ k+vvl +s+ + ++ee+qvf+++ v+nl KIAA1619 469 YDLLFLGTADGWIH-KAVVL--GSGmH----IIEETQVFRES--QSVENL 509 eisskq<-* +is+ q KIAA1619 510 VISLLQ 515 PF01437.15.fs: domain 1 of 1, from 533 to 589: score 56.7, E = 5.8e-18 *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfygeCprse. +Cs+y+sC +C++ardp yCgW+++++ C ++ +rs++ KIAA1619 533 SCSRYRSCYDCILARDP-YCGWDPGTHACAAATT------IANRSQg 572 pendqwldwswssskCp<-* ++ ++d++ +++C KIAA1619 573 SRTALIQDIERGNRGCE 589 PF01437.15.ls: domain 1 of 1, from 533 to 589: score 58.6, E = 1.9e-14 *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfygeCprse. +Cs+y+sC +C++ardp yCgW+++++ C ++ +rs++ KIAA1619 533 SCSRYRSCYDCILARDP-YCGWDPGTHACAAATT------IANRSQg 572 pendqwldwswssskCp<-* ++ ++d++ +++C KIAA1619 573 SRTALIQDIERGNRGCE 589 //