hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07595345/chunk_1/iprscan-20080502-07595345.nocrc
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Query sequence: KIAA1620
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00595.14.fs PDZ domain (Also known as DHR or GLGF)          25.8    1.4e-06   1
PF00595.14.ls PDZ domain (Also known as DHR or GLGF)          15.2      0.017   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00595.14.fs   1/1      20    69 ..     1    55 [.    25.8  1.4e-06
PF00595.14.ls   1/1      20    99 ..     1    86 []    15.2    0.017

Alignments of top-scoring domains:
PF00595.14.fs: domain 1 of 1, from 20 to 69: score 25.8, E = 1.4e-06
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      e+++e e + g  G++++gg+++    gifv e+ ++ ++A+++ +L
    KIAA1620    20    EIIVETEAQTGVSGINVAGGGKE----GIFVRELRED-SPAARSLSL 61   

                   qaGDqIls<-*
                   q+GDq+ls   
    KIAA1620    62 QEGDQLLS    69   

PF00595.14.ls: domain 1 of 1, from 20 to 99: score 15.2, E = 0.017
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      e+++e e + g  G++++gg+++    gifv e+ ++ ++A+++ +L
    KIAA1620    20    EIIVETEAQTGVSGINVAGGGKE----GIFVRELRED-SPAARSLSL 61   

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   q+GDq+ls   + +en+  e+a  +l+ +   +v+  ++   
    KIAA1620    62 QEGDQLLSA-RVFFENFKYEDALRLLQCAEPYKVSFCLK    99   

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