hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07595345/chunk_1/iprscan-20080502-07595345.nocrc
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Query sequence: KIAA1620
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00228                                                  40.8    1.9e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00228    1/1      30   102 ..     1    80 []    40.8  1.9e-07

Alignments of top-scoring domains:
SM00228: domain 1 of 1, from 30 to 102: score 40.8, E = 1.9e-07
                   *->gglGfsivg....gifvssvvpGspAakaGrkslglLkvGDvIleVN
                      g  G++++g++++gifv ++ ++spAa++       L++GD++l+  
    KIAA1620    30    GVSGINVAGggkeGIFVRELREDSPAARSLS-----LQEGDQLLSA- 70   

                   GetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                    ++  e++ +e+a++ll++a +     kv++ ++R     
    KIAA1620    71 -RVFFENFKYEDALRLLQCAEP----YKVSFCLKRTV    102  

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