HUGE

Gene/Protein Characteristic Table for KIAA1623

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK01632
Accession No. :	AB046843
Description :	Transmembrane protein 16H.
HUGO Gene Name :
Clone Name :	fj04650 [Vector Info]
Flexi ORF Clone :	pF1KSDA1623
Source :	Human fetal brain
Note :	We replaced hk07620, former representative clones for KIAA1623 with fj04650. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 4150 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 292 bp

Genome contig ID gi42406306r_17195034
PolyA signal sequence
(AATAAA,-22)
+----*----+----*----+----*----+----
ACGGCAGAAATGCAATAAAAACTATATTTCAACAG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
TGCCCGAGGTCAGAGCAGTGGAAAAGGGAGTGGGGGTGGGGGAGTCTGGG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 19 r 17295034 17306638 18 99.6 Perfect prediction

Features of the protein sequence	Description

Length: 1236 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q9HCE9	100.0	Anoctamin-8; Tr...	Homo sapiens
XP_541955	93.8	similar to CG15...	Canis lupus fam...
AAH27735	85.4	Ano8 protein [M...	Mus musculus
XP_894573	83.8	similar to Tmem...	Mus musculus
Q6PB70	83.7	Anoctamin-8; Tr...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR007632 475 884 PF04547 Protein of unknown function DUF590

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR007632	475	884	PF04547	Protein of unknown function DUF590

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 364 SLPLCLACLVCVFLLMLGCFQLQ 386 PRIMARY 23

2 397 RLARFLPKVMLALLVSVSAEGY 418 SECONDARY 22

3 441 LIIKVVLFQFVNSYLSLFYIGFY 463 SECONDARY 23

4 760 GYVVLFSSAFPLAALCALVNNLI 782 PRIMARY 23

5 811 KVMEAMGVLAIVVNCYLIGQCGQ 833 PRIMARY 23

6 845 AAIVSVVVLEHFALLLKYLIHVA 867 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	364	SLPLCLACLVCVFLLMLGCFQLQ	386	PRIMARY	23
2	397	RLARFLPKVMLALLVSVSAEGY	418	SECONDARY	22
3	441	LIIKVVLFQFVNSYLSLFYIGFY	463	SECONDARY	23
4	760	GYVVLFSSAFPLAALCALVNNLI	782	PRIMARY	23
5	811	KVMEAMGVLAIVVNCYLIGQCGQ	833	PRIMARY	23
6	845	AAIVSVVVLEHFALLLKYLIHVA	867	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TCCTCAAGTACCTCATCCACG

Primer_r
: TGGCGCTCGTGTCTCTTAAAG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 19

Experimental conditions

Panel name	: RH-map
Primer_f	: TTCCTCAAACTGTCCTCCCCC
Primer_r	: GGGCATCCAGGCACATAAAGG
PCR product length	: 136 bp
PCR conditions	: 95 °C15 sec66 °C60 sec35 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	292 bp
Genome contig ID	gi42406306r_17195034
PolyA signal sequence (AATAAA,-22)	+--------+--------+----*----+---- ACGGCAGAAATGCAATAAAAACTATATTTCAACAG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* TGCCCGAGGTCAGAGCAGTGGAAAAGGGAGTGGGGGTGGGGGAGTCTGGG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	19	r	17295034	17306638	18	99.6	Perfect prediction

Primer_f	: TCCTCAAGTACCTCATCCACG
Primer_r	: TGGCGCTCGTGTCTCTTAAAG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1623

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information