HUGE

Gene/Protein Characteristic Table for KIAA1624

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00258
Accession No. :	AB046844
Description :	Protein GPR107 precursor.
HUGO Gene Name :	G protein-coupled receptor 107 (GPR107)
Clone Name :	fg02331 [Vector Info]
Flexi ORF Clone :	pF1KA1624
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 6840 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 5039 bp

Genome contig ID gi89161216f_131756035
PolyA signal sequence
(AATAAA,-17)
+----*----+----*----+----*----+----
CGTGTTGCAAATGTGTAAAATAAAGATTATCTGGC
Flanking genome sequence
(186227 - 186276)
----+----*----+----*----+----*----+----*----+----*
AGAACCGTGTGTGTTTGAGATGCAGGGAGTTGCCGGCTCCTGGTGCTGTC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 9 f 131856035 131942260 20 99.9 Perfect prediction

Features of the protein sequence	Description

Length: 599 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAG11346	0	100.0	G-protein coupl...	synthetic construct
Q5VW38	0	99.7	Protein GPR107;...	Homo sapiens
EAW87922	3.1e-195	95.2	G protein-coupl...	Homo sapiens
XP_001164765	3.6e-195	95.0	G protein-coupl...	Pan troglodytes
AAK57695	4.3e-186	92.0	lung seven tran...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR009637 214 552 PF06814 Transmembrane receptor

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR009637	214	552	PF06814	Transmembrane receptor

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 19 GLRLLPMLGLLQLLAEPGLGRVH 41 SECONDARY 23

2 263 KLYISMAFFFFLSGTIWIHIL 283 PRIMARY 21

3 329 AVVYYITHLLKGALLFITIALIG 351 PRIMARY 23

4 368 IFMIVIPLQVLANVAYIIIESTE 390 SECONDARY 23

5 401 DSLFLVDLLCCGAILFPVVWSIR 423 PRIMARY 23

6 496 YYVLIVCYIYFTRIIAFLLKLAV 518 PRIMARY 23

7 523 KWLYQLLDETATLVFFVLTGYK 544 SECONDARY 22

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	19	GLRLLPMLGLLQLLAEPGLGRVH	41	SECONDARY	23
2	263	KLYISMAFFFFLSGTIWIHIL	283	PRIMARY	21
3	329	AVVYYITHLLKGALLFITIALIG	351	PRIMARY	23
4	368	IFMIVIPLQVLANVAYIIIESTE	390	SECONDARY	23
5	401	DSLFLVDLLCCGAILFPVVWSIR	423	PRIMARY	23
6	496	YYVLIVCYIYFTRIIAFLLKLAV	518	PRIMARY	23
7	523	KWLYQLLDETATLVFFVLTGYK	544	SECONDARY	22

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CATTTGCTTTCCTGGTTAGAG

Primer_r
: CAACACGGCAAGAGAATTCAC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 9

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Length of 3'UTR	5039 bp
Genome contig ID	gi89161216f_131756035
PolyA signal sequence (AATAAA,-17)	+--------+--------+----*----+---- CGTGTTGCAAATGTGTAAAATAAAGATTATCTGGC
Flanking genome sequence (186227 - 186276)	----+--------+--------+--------+--------+----* AGAACCGTGTGTGTTTGAGATGCAGGGAGTTGCCGGCTCCTGGTGCTGTC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	9	f	131856035	131942260	20	99.9	Perfect prediction

Primer_f	: CATTTGCTTTCCTGGTTAGAG
Primer_r	: CAACACGGCAAGAGAATTCAC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1624

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information