hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-08082287/chunk_1/iprscan-20080502-08082287.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1625 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00632.15.ls HECT-domain (ubiquitin-transferase) 596.9 1.7e-176 1 PF00632.15.fs HECT-domain (ubiquitin-transferase) 595.0 6.5e-176 1 PF00397.16.ls WW domain 99.0 1.3e-26 2 PF00397.16.fs WW domain 95.0 1.2e-25 2 PF00168.20.fs C2 domain 79.0 6.2e-23 1 PF00168.20.ls C2 domain 80.9 3.6e-21 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00168.20.fs 1/1 117 201 .. 1 88 [] 79.0 6.2e-23 PF00168.20.ls 1/1 117 201 .. 1 88 [] 80.9 3.6e-21 PF00397.16.ls 1/2 338 367 .. 1 30 [] 43.3 7.9e-10 PF00397.16.fs 1/2 338 367 .. 1 30 [] 41.3 1.4e-10 PF00397.16.fs 2/2 410 439 .. 1 30 [] 53.8 4.4e-14 PF00397.16.ls 2/2 410 439 .. 1 30 [] 55.8 1.4e-13 PF00632.15.fs 1/1 551 859 .] 1 351 [] 595.0 6.5e-176 PF00632.15.ls 1/1 551 859 .] 1 351 [] 596.9 1.7e-176 Alignments of top-scoring domains: PF00168.20.fs: domain 1 of 1, from 117 to 201: score 79.0, E = 6.2e-23 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikktl +r+tv++AknL++kD +++++DP++k+ ++g +++ + T ++k+tl KIAA1625 117 IRLTVLCAKNLAKKD-FFRLPDPFAKIVVDGSGQC--HSTDTVKNTL 160 NPvWNEtFtFevpppdlqetLeieVyDydrfgr...ddflGevs<-* +P+WN++++++ + + ++ ++i+V+++ ++ ++++ flG+v+ KIAA1625 161 DPKWNQHYDLY--VGKTDS-ITISVWNHKKIHKkqgAGFLGCVR 201 PF00168.20.ls: domain 1 of 1, from 117 to 201: score 80.9, E = 3.6e-21 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikktl +r+tv++AknL++kD +++++DP++k+ ++g +++ + T ++k+tl KIAA1625 117 IRLTVLCAKNLAKKD-FFRLPDPFAKIVVDGSGQC--HSTDTVKNTL 160 NPvWNEtFtFevpppdlqetLeieVyDydrfgr...ddflGevs<-* +P+WN++++++ + + ++ ++i+V+++ ++ ++++ flG+v+ KIAA1625 161 DPKWNQHYDLY--VGKTDS-ITISVWNHKKIHKkqgAGFLGCVR 201 PF00397.16.ls: domain 1 of 2, from 338 to 367: score 43.3, E = 7.9e-10 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp+g e+rt+ +G++Y+ +++T+ ++W +P KIAA1625 338 LPEGYEQRTTVQGQVYFLHTQTGVSTWHDP 367 PF00397.16.fs: domain 1 of 2, from 338 to 367: score 41.3, E = 1.4e-10 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp+g e+rt+ +G++Y+ +++T+ ++W +P KIAA1625 338 LPEGYEQRTTVQGQVYFLHTQTGVSTWHDP 367 PF00397.16.fs: domain 2 of 2, from 410 to 439: score 53.8, E = 4.4e-14 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lppgWe+r + +Gr+Y+++hn++tTq+++P KIAA1625 410 LPPGWEVRSTVSGRIYFVDHNNRTTQFTDP 439 PF00397.16.ls: domain 2 of 2, from 410 to 439: score 55.8, E = 1.4e-13 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lppgWe+r + +Gr+Y+++hn++tTq+++P KIAA1625 410 LPPGWEVRSTVSGRIYFVDHNNRTTQFTDP 439 PF00632.15.fs: domain 1 of 1, from 551 to 859: score 595.0, E = 6.5e-176 *->tLlsrelfnPdygLFeysddtdvnesgyaedsytlqinPlssesnpe +Ll++e++nP+ygLF ys + + y lqinP+ss+ np+ KIAA1625 551 YLLCHEMLNPYYGLFQYS----------TDNIYMLQINPDSSI-NPD 586 hlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkpvtleDlesvD hl+yF+F+Gri+GlA+++g++++ F+ +FYK+LL gkp+ l+DlesvD KIAA1625 587 HLSYFHFVGRIMGLAVFHGHYINGGFTVPFYKQLL--GKPIQLSDLESVD 634 PelynSLkwllendgdrhILLgsledveedLeLtFsveeessagfdpdas Pel++SL+w+lend++ +L+ tF+ve++ f KIAA1625 635 PELHKSLVWILENDIT------------PVLDHTFCVEHNA---F----- 664 dfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeAFrk G + ++e LkPnGrn+pVT+eNkkeYV+Lyv++r+++gie Qf A+ k KIAA1625 665 --GRILQHE-LKPNGRNVPVTEENKKEYVRLYVNWRFMRGIEAQFLALQK 711 GFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkggYtedsp GFne+ip++lL+ Fd +ELel+i G+++ iD++d+ksnT+ k ++ +ds KIAA1625 712 GFNELIPQHLLKPFDQKELELIIGGLDK-IDLNDWKSNTRLK-HCVADSN 759 lktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgp.GsnGpp +++wFW++ve f++e r++LLqFvTGs RvPl+GFkaLqg++G+ Gp+ KIAA1625 760 --IVRWFWQAVETFDEERRARLLQFVTGSTRVPLQGFKALQGStGAAGPR 807 kFtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAIneete +FtI+ + +d+LP+AHTCFNr+d+PpY+S+E+L+ekLl+A+ eet+ KIAA1625 808 LFTIHLI--DANTDNLPKAHTCFNRIDIPPYESYEKLYEKLLTAV-EETC 854 GFgle<-* GF e KIAA1625 855 GFAVE 859 PF00632.15.ls: domain 1 of 1, from 551 to 859: score 596.9, E = 1.7e-176 *->tLlsrelfnPdygLFeysddtdvnesgyaedsytlqinPlssesnpe +Ll++e++nP+ygLF ys + + y lqinP+ss+ np+ KIAA1625 551 YLLCHEMLNPYYGLFQYS----------TDNIYMLQINPDSSI-NPD 586 hlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkpvtleDlesvD hl+yF+F+Gri+GlA+++g++++ F+ +FYK+LL gkp+ l+DlesvD KIAA1625 587 HLSYFHFVGRIMGLAVFHGHYINGGFTVPFYKQLL--GKPIQLSDLESVD 634 PelynSLkwllendgdrhILLgsledveedLeLtFsveeessagfdpdas Pel++SL+w+lend++ +L+ tF+ve++ f KIAA1625 635 PELHKSLVWILENDIT------------PVLDHTFCVEHNA---F----- 664 dfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeAFrk G + ++e LkPnGrn+pVT+eNkkeYV+Lyv++r+++gie Qf A+ k KIAA1625 665 --GRILQHE-LKPNGRNVPVTEENKKEYVRLYVNWRFMRGIEAQFLALQK 711 GFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkggYtedsp GFne+ip++lL+ Fd +ELel+i G+++ iD++d+ksnT+ k ++ +ds KIAA1625 712 GFNELIPQHLLKPFDQKELELIIGGLDK-IDLNDWKSNTRLK-HCVADSN 759 lktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgp.GsnGpp +++wFW++ve f++e r++LLqFvTGs RvPl+GFkaLqg++G+ Gp+ KIAA1625 760 --IVRWFWQAVETFDEERRARLLQFVTGSTRVPLQGFKALQGStGAAGPR 807 kFtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAIneete +FtI+ + +d+LP+AHTCFNr+d+PpY+S+E+L+ekLl+A+ eet+ KIAA1625 808 LFTIHLI--DANTDNLPKAHTCFNRIDIPPYESYEKLYEKLLTAV-EETC 854 GFgle<-* GF e KIAA1625 855 GFAVE 859 //