hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-08150336/chunk_1/iprscan-20080502-08150336.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1629
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         222.1    1.2e-63  14
PF00096.16.fs Zinc finger, C2H2 type                         210.1    4.7e-60  15

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.ls   5/14    870   893 ..     1    24 []    20.6   0.0052
PF00096.16.ls   6/14    898   921 ..     1    24 []    18.6     0.02
PF00096.16.ls   7/14    933   955 ..     1    24 []    21.8   0.0023
PF00096.16.ls   8/14    964   987 ..     1    24 []    20.1   0.0072
PF00096.16.ls  10/14   1083  1106 ..     1    24 []    22.2   0.0017
PF00096.16.ls  13/14   1231  1254 ..     1    24 []    22.1   0.0019
PF00096.16.ls  14/14   1292  1314 ..     1    24 []    23.0  0.00098
PF00096.16.fs  15/15   1293  1314 ..     2    24 .]    22.6  0.00022

Alignments of top-scoring domains:
PF00096.16.ls: domain 5 of 14, from 870 to 893: score 20.6, E = 0.0052
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ++C  +C+ ++s+ + Lk+H++ +H   
    KIAA1629   870    FRCV-HCNVVYSDVAALKSHIQGsH    893  

PF00096.16.ls: domain 6 of 14, from 898 to 921: score 18.6, E = 0.02
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ykCp +C  +F++  + ++H  t+H   
    KIAA1629   898    YKCP-ICPMAFKSAPSTHSHAYTqH    921  

PF00096.16.ls: domain 7 of 14, from 933 to 955: score 21.8, E = 0.0023
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+  C+++F+ +  L rH   H   
    KIAA1629   933    YKCS-MCDTVFTLQTLLYRHFDQH    955  

PF00096.16.ls: domain 8 of 14, from 964 to 987: score 20.1, E = 0.0072
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      +kCp dC   + +k  +  H+++ H   
    KIAA1629   964    FKCP-DCSLLYAQKQLMMDHIKSmH    987  

PF00096.16.ls: domain 10 of 14, from 1083 to 1106: score 22.2, E = 0.0017
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      + C  +C+ksFs++++L rH r++H   
    KIAA1629  1083    HPCR-QCDKSFSSSHSLCRHNRIkH    1106 

PF00096.16.ls: domain 13 of 14, from 1231 to 1254: score 22.1, E = 0.0019
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y+C  +Cg +++++ +L rHl + H   
    KIAA1629  1231    YQCR-ECGLCYTSHVSLSRHLFIvH    1254 

PF00096.16.ls: domain 14 of 14, from 1292 to 1314: score 23.0, E = 0.00098
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       kC+ +C k+F + + L++H+rtH   
    KIAA1629  1292    RKCK-VCAKTFETEAALNTHMRTH    1314 

PF00096.16.fs: domain 15 of 15, from 1293 to 1314: score 22.6, E = 0.00022
                   *->kCpfdCgksFsrksnLkrHlrtH<-*
                      kC+ +C k+F + + L++H+rtH   
    KIAA1629  1293    KCK-VCAKTFETEAALNTHMRTH    1314 

//