hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-08234879/chunk_1/iprscan-20080502-08234879.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1634 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 235.3 1.2e-67 5 PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 233.2 5.3e-67 5 PF00397.16.ls WW domain 95.5 1.4e-25 2 PF00397.16.fs WW domain 91.5 1.2e-24 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00397.16.fs 1/2 44 73 .. 1 30 [] 50.6 3.3e-13 PF00397.16.ls 1/2 44 73 .. 1 30 [] 52.6 1.2e-12 PF00397.16.ls 2/2 90 119 .. 1 30 [] 42.9 1e-09 PF00397.16.fs 2/2 90 119 .. 1 30 [] 40.9 1.8e-10 PF00595.14.fs 1/5 159 225 .. 1 72 [. 38.4 3.8e-10 PF00595.14.ls 1/5 159 240 .. 1 86 [] 35.6 1.6e-07 PF00595.14.ls 3/5 475 556 .. 1 86 [] 44.1 4.3e-10 PF00595.14.fs 3/5 475 556 .. 1 86 [] 42.1 3.5e-11 PF00595.14.fs 4/5 600 684 .. 1 86 [] 67.8 2.1e-18 PF00595.14.ls 4/5 600 684 .. 1 86 [] 69.8 8.3e-18 PF00595.14.fs 5/5 770 849 .. 1 86 [] 73.8 4.3e-20 PF00595.14.ls 5/5 770 849 .. 1 86 [] 75.8 1.3e-19 Alignments of top-scoring domains: PF00397.16.fs: domain 1 of 2, from 44 to 73: score 50.6, E = 3.3e-13 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp +We+++++ G +Y+++hnTktT+W +P KIAA1634 44 LPKNWEMAYTDTGMIYFIDHNTKTTTWLDP 73 PF00397.16.ls: domain 1 of 2, from 44 to 73: score 52.6, E = 1.2e-12 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp +We+++++ G +Y+++hnTktT+W +P KIAA1634 44 LPKNWEMAYTDTGMIYFIDHNTKTTTWLDP 73 PF00397.16.ls: domain 2 of 2, from 90 to 119: score 42.9, E = 1e-09 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp gWe++ dp+ +YY++h +++Tq+e+P KIAA1634 90 LPYGWEKIEDPQYGTYYVDHLNQKTQFENP 119 PF00397.16.fs: domain 2 of 2, from 90 to 119: score 40.9, E = 1.8e-10 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp gWe++ dp+ +YY++h +++Tq+e+P KIAA1634 90 LPYGWEKIEDPQYGTYYVDHLNQKTQFENP 119 PF00595.14.fs: domain 1 of 5, from 159 to 225: score 38.4, E = 3.8e-10 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +l+k + g+Gf+i g ++++d+ + v++vl++ g+A+++G++ KIAA1634 159 RASLKK--STMGFGFTIIG--GDRPDEFLQVKNVLKD-GPAAQDGKI 200 qaGDqIlsvNGqdlenlsheeavla<-* +GD+I+ +NG + +++h+++v++ KIAA1634 201 APGDVIVDINGNCVLGHTHADVVQM 225 PF00595.14.ls: domain 1 of 5, from 159 to 240: score 35.6, E = 1.6e-07 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +l+k + g+Gf+i g ++++d+ + v++vl++ g+A+++G++ KIAA1634 159 RASLKK--STMGFGFTIIG--GDRPDEFLQVKNVLKD-GPAAQDGKI 200 qaGDqIlsvNGqdlenlsheeavla..lkgsggsevtLtvl<-* +GD+I+ +NG + +++h+++v++ +l + ++ v Lt+ KIAA1634 201 APGDVIVDINGNCVLGHTHADVVQMfqLVPVNQ-YVNLTLC 240 PF00595.14.ls: domain 3 of 5, from 475 to 556: score 44.1, E = 4.3e-10 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +v l k + +g+Gf++ gg++ +d++i++ ++p gaAe++GrL KIAA1634 475 DVFLRK--QESGFGFRVLGGDG--PDQSIYIGAIIPL-GAAEKDGRL 516 qaGDqIlsvNGqdlenlsheeavlalkgsgg.sevtLtvl<-* +a D ++ ++G ++ + sh ++ ++++ + ++ v Ltv+ KIAA1634 517 RAADELMCIDGIPVKGKSHKQVLDLMTTAARnGHVLLTVR 556 PF00595.14.fs: domain 3 of 5, from 475 to 556: score 42.1, E = 3.5e-11 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +v l k + +g+Gf++ gg++ +d++i++ ++p gaAe++GrL KIAA1634 475 DVFLRK--QESGFGFRVLGGDG--PDQSIYIGAIIPL-GAAEKDGRL 516 qaGDqIlsvNGqdlenlsheeavlalkgsgg.sevtLtvl<-* +a D ++ ++G ++ + sh ++ ++++ + ++ v Ltv+ KIAA1634 517 RAADELMCIDGIPVKGKSHKQVLDLMTTAARnGHVLLTVR 556 PF00595.14.fs: domain 4 of 5, from 600 to 684: score 67.8, E = 2.1e-18 *->evtlekedkrgglGfsikggsdkga..dkgifvsevlpGsgaAeagG +v+l++ +++g+Gf i ++k++++ + + +v++G ++A++ G KIAA1634 600 DVVLQRK-ENEGFGFVILTSKNKPPpgVIPHKIGRVIEG-SPADRCG 644 rLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +L++GD I +vNGq+++ lsh+ +v+++k++g +vtLtv+ KIAA1634 645 KLKVGDHISAVNGQSIVELSHDNIVQLIKDAGV-TVTLTVI 684 PF00595.14.ls: domain 4 of 5, from 600 to 684: score 69.8, E = 8.3e-18 *->evtlekedkrgglGfsikggsdkga..dkgifvsevlpGsgaAeagG +v+l++ +++g+Gf i ++k++++ + + +v++G ++A++ G KIAA1634 600 DVVLQRK-ENEGFGFVILTSKNKPPpgVIPHKIGRVIEG-SPADRCG 644 rLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +L++GD I +vNGq+++ lsh+ +v+++k++g +vtLtv+ KIAA1634 645 KLKVGDHISAVNGQSIVELSHDNIVQLIKDAGV-TVTLTVI 684 PF00595.14.fs: domain 5 of 5, from 770 to 849: score 73.8, E = 4.3e-20 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL v le+ ++ g+Gfs++gg++ +g+f+ ++ ++ g+A ++Gr+ KIAA1634 770 PVELER--GPRGFGFSLRGGKEYN--MGLFILRLAED-GPAIKDGRI 811 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GDqI+++NG+++ +++h +a+++++ g+ +v L+++ KIAA1634 812 HVGDQIVEINGEPTQGITHTRAIELIQAGGN-KVLLLLR 849 PF00595.14.ls: domain 5 of 5, from 770 to 849: score 75.8, E = 1.3e-19 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL v le+ ++ g+Gfs++gg++ +g+f+ ++ ++ g+A ++Gr+ KIAA1634 770 PVELER--GPRGFGFSLRGGKEYN--MGLFILRLAED-GPAIKDGRI 811 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GDqI+++NG+++ +++h +a+++++ g+ +v L+++ KIAA1634 812 HVGDQIVEINGEPTQGITHTRAIELIQAGGN-KVLLLLR 849 //