hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-08234879/chunk_1/iprscan-20080502-08234879.nocrc
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Query sequence: KIAA1634
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00228                                                 356.8   1.4e-102   5
SM00456                                                  97.4    1.7e-24   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00456    1/2      43    75 ..     1    34 []    54.4  1.5e-11
SM00456    2/2      89   121 ..     1    34 []    43.0    4e-08
SM00228    1/5     167   243 ..     1    80 []    73.9    2e-17
SM00228    2/5     335   405 ..     1    80 []    49.6  4.1e-10
SM00228    3/5     483   559 ..     1    80 []    67.4  1.8e-15
SM00228    4/5     609   687 ..     1    80 []    82.2  6.5e-20
SM00228    5/5     778   852 ..     1    80 []    83.8  2.1e-20

Alignments of top-scoring domains:
SM00456: domain 1 of 2, from 43 to 75: score 54.4, E = 1.5e-11
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                      plP +We++++   G++Y+++h+Tk+t+W +Pr+   
    KIAA1634    43    PLPKNWEMAYTDT-GMIYFIDHNTKTTTWLDPRL    75   

SM00456: domain 2 of 2, from 89 to 121: score 43.0, E = 4e-08
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                       lP gWe+++dp+   +YY++h +++tq+e P+e   
    KIAA1634    89    ELPYGWEKIEDPQ-YGTYYVDHLNQKTQFENPVE    121  

SM00228: domain 1 of 5, from 167 to 243: score 73.9, E = 2e-17
                   *->gglGfsivg......gifvssvvpGspAakaGrkslglLkvGDvIle
                       g+Gf+i g++++++ + v++v++++pAa++G+     + +GDvI+ 
    KIAA1634   167    MGFGFTIIGgdrpdeFLQVKNVLKDGPAAQDGK-----IAPGDVIVD 208  

                   VNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +NG   v g th+++v++ +  +   v++ v Lt++Rg    
    KIAA1634   209 ING-NCVLGHTHADVVQMFQLVP---VNQYVNLTLCRGY    243  

SM00228: domain 2 of 5, from 335 to 405: score 49.6, E = 4.1e-10
                   *->gglGfsivg...gifvssvvpGspAakaGrkslglLkvGDvIleVNG
                      +g+Gf i+++++g  v+ +++    +  G      L++GD+I e+  
    KIAA1634   335    KGFGFAIADsptGQKVKMILD--SQWCQG------LQKGDIIKEIYH 373  

                   etsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                    ++v++lth+++v++lk+ +   vG  v L++lRgg   
    KIAA1634   374 -QNVQNLTHLQVVEVLKQFP---VGADVPLLILRGG    405  

SM00228: domain 3 of 5, from 483 to 559: score 67.4, E = 1.8e-15
                   *->gglGfsivg......gifvssvvpGspAakaGrkslglLkvGDvIle
                       g+Gf++ g++++++ i++  ++p ++A+k+Gr     L++ D+++ 
    KIAA1634   483    SGFGFRVLGgdgpdqSIYIGAIIPLGAAEKDGR-----LRAADELMC 524  

                   VNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   ++G ++v+g++h +++dl+  a ++g   +v Ltv+R+    
    KIAA1634   525 IDG-IPVKGKSHKQVLDLMTTAARNG---HVLLTVRRKI    559  

SM00228: domain 4 of 5, from 609 to 687: score 82.2, E = 6.5e-20
                   *->gglGfsivg..........gifvssvvpGspAakaGrkslglLkvGD
                      +g+Gf i  ++++++++  ++ + +v++GspA+++G+     LkvGD
    KIAA1634   609    EGFGFVILTsknkpppgviPHKIGRVIEGSPADRCGK-----LKVGD 650  

                   vIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +I +VNG +s+  l+h+ +v+l+k ag      +vtLtv+ ++   
    KIAA1634   651 HISAVNG-QSIVELSHDNIVQLIKDAGV-----TVTLTVIAEE    687  

SM00228: domain 5 of 5, from 778 to 852: score 83.8, E = 2.1e-20
                   *->gglGfsivg......gifvssvvpGspAakaGrkslglLkvGDvIle
                       g+Gfs++g+++ + g+f+ ++ +++pA k+Gr     ++vGD+I+e
    KIAA1634   778    RGFGFSLRGgkeynmGLFILRLAEDGPAIKDGR-----IHVGDQIVE 819  

                   VNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +NG ++++g th +a++l+++ g+     kv L++++g    
    KIAA1634   820 ING-EPTQGITHTRAIELIQAGGN-----KVLLLLRPGT    852  

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