hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-08272109/chunk_1/iprscan-20080502-08272109.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1636 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00023.20.ls Ankyrin repeat 238.7 1.2e-68 11 PF00023.20.fs Ankyrin repeat 236.7 4.7e-68 11 PF07719.7.ls Tetratricopeptide repeat 65.6 1.5e-16 3 PF07719.7.fs Tetratricopeptide repeat 59.6 1.2e-15 3 PF00515.18.fs Tetratricopeptide repeat 46.7 2.8e-12 3 PF00515.18.ls Tetratricopeptide repeat 50.1 6.7e-12 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00023.20.ls 1/11 719 755 .. 1 33 [] 4.2 7.2 PF00023.20.fs 1/11 726 755 .. 8 33 .] 9.3 0.13 PF00023.20.ls 2/11 758 790 .. 1 33 [] 7.4 2.4 PF00023.20.fs 2/11 767 790 .. 10 33 .] 11.0 0.044 PF00023.20.fs 3/11 791 823 .. 1 33 [] 22.4 3e-05 PF00023.20.ls 3/11 791 823 .. 1 33 [] 24.4 0.00038 PF00023.20.fs 4/11 824 847 .. 1 24 [. 18.4 0.00039 PF00023.20.ls 4/11 824 854 .. 1 33 [] 18.0 0.032 PF00023.20.ls 5/11 864 905 .. 1 33 [] 2.4 13 PF00023.20.fs 5/11 868 886 .. 5 23 .. 5.4 1.6 PF00023.20.fs 6/11 907 939 .. 1 33 [] 27.4 1.2e-06 PF00023.20.ls 6/11 907 939 .. 1 33 [] 29.4 1.2e-05 PF00023.20.ls 7/11 940 972 .. 1 33 [] 28.7 1.9e-05 PF00023.20.fs 7/11 940 972 .. 1 33 [] 26.7 1.9e-06 PF00023.20.fs 8/11 973 1005 .. 1 33 [] 35.3 7.5e-09 PF00023.20.ls 8/11 973 1005 .. 1 33 [] 37.3 5e-08 PF00023.20.ls 9/11 1006 1038 .. 1 33 [] 33.0 9.6e-07 PF00023.20.fs 9/11 1006 1038 .. 1 33 [] 31.0 1.2e-07 PF00023.20.fs 10/11 1039 1071 .. 1 33 [] 36.8 2.9e-09 PF00023.20.ls 10/11 1039 1071 .. 1 33 [] 38.8 1.8e-08 PF00023.20.ls 11/11 1072 1104 .. 1 33 [] 15.2 0.19 PF00023.20.fs 11/11 1072 1104 .. 1 33 [] 13.2 0.011 PF00515.18.fs 2/3 1165 1198 .. 1 34 [] 16.3 0.0013 PF00515.18.ls 2/3 1165 1198 .. 1 34 [] 18.3 0.026 PF00515.18.fs 3/3 1199 1232 .. 1 34 [] 28.6 3.8e-07 PF07719.7.fs 3/3 1199 1232 .. 1 34 [] 27.0 1.5e-06 PF07719.7.ls 3/3 1199 1232 .. 1 34 [] 29.0 1.5e-05 PF00515.18.ls 3/3 1199 1232 .. 1 34 [] 30.6 5e-06 Alignments of top-scoring domains: PF00023.20.ls: domain 1 of 11, from 719 to 755: score 4.2, E = 7.2 *->dGfTPLHlAalrg....nlevvklLlsqGAdlnaqdd<-* lA+lr+ +n++v +lL+ GA++n ++ KIAA1636 719 TEGLSMALASLRNlytpNIKVSRLLILGGANINYRTE 755 PF00023.20.fs: domain 1 of 11, from 726 to 755: score 9.3, E = 0.13 *->lAalrg....nlevvklLlsqGAdlnaqdd<-* lA+lr+ +n++v +lL+ GA++n ++ KIAA1636 726 LASLRNlytpNIKVSRLLILGGANINYRTE 755 PF00023.20.ls: domain 2 of 11, from 758 to 790: score 7.4, E = 2.4 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + L + ++ g++e+v lLl+ GA+++a KIAA1636 758 NNAPILCVQSHLGYTEMVALLLEFGANVDASSE 790 PF00023.20.fs: domain 2 of 11, from 767 to 790: score 11.0, E = 0.044 *->alrgnlevvklLlsqGAdlnaqdd<-* ++ g++e+v lLl+ GA+++a KIAA1636 767 SHLGYTEMVALLLEFGANVDASSE 790 PF00023.20.fs: domain 3 of 11, from 791 to 823: score 22.4, E = 3e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G TPL +Aa g+l++v lL ++ A +++ d+ KIAA1636 791 SGLTPLGYAAAAGYLSIVVLLCKKRAKVDHLDK 823 PF00023.20.ls: domain 3 of 11, from 791 to 823: score 24.4, E = 0.00038 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G TPL +Aa g+l++v lL ++ A +++ d+ KIAA1636 791 SGLTPLGYAAAAGYLSIVVLLCKKRAKVDHLDK 823 PF00023.20.fs: domain 4 of 11, from 824 to 847: score 18.4, E = 0.00039 *->dGfTPLHlAalrgnlevvklLlsq<-* +G+ +L +Aalrg+levvk+L+++ KIAA1636 824 NGQCALVHAALRGHLEVVKFLIQC 847 PF00023.20.ls: domain 4 of 11, from 824 to 854: score 18.0, E = 0.032 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+ +L +Aalrg+levvk+L++ +d + KIAA1636 824 NGQCALVHAALRGHLEVVKFLIQ--CDWTMAGQ 854 PF00023.20.ls: domain 5 of 11, from 864 to 905: score 2.4, E = 13 *->dGfTPLHlAalrgnlevvklLls.........qGAdlnaqdd<-* + +L Aa++g++e+v++Ll+ +++++++ A +n d KIAA1636 864 AIQQALIAAASMGYTEIVSYLLDlpekdeeevERAQINSFDS 905 PF00023.20.fs: domain 5 of 11, from 868 to 886: score 5.4, E = 1.6 *->PLHlAalrgnlevvklLls<-* +L Aa++g++e+v++Ll+ KIAA1636 868 ALIAAASMGYTEIVSYLLD 886 PF00023.20.fs: domain 6 of 11, from 907 to 939: score 27.4, E = 1.2e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+L Aa rg lev++lLl+qGA + ++ KIAA1636 907 WGETALTAAAGRGKLEVCRLLLEQGAAVAQPNR 939 PF00023.20.ls: domain 6 of 11, from 907 to 939: score 29.4, E = 1.2e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+L Aa rg lev++lLl+qGA + ++ KIAA1636 907 WGETALTAAAGRGKLEVCRLLLEQGAAVAQPNR 939 PF00023.20.ls: domain 7 of 11, from 940 to 972: score 28.7, E = 1.9e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G PL ++ g+ ++v lLl +GAd+n+ d+ KIAA1636 940 RGAVPLFSTVRQGHWQIVDLLLTHGADVNMADK 972 PF00023.20.fs: domain 7 of 11, from 940 to 972: score 26.7, E = 1.9e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G PL ++ g+ ++v lLl +GAd+n+ d+ KIAA1636 940 RGAVPLFSTVRQGHWQIVDLLLTHGADVNMADK 972 PF00023.20.fs: domain 8 of 11, from 973 to 1005: score 35.3, E = 7.5e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TPL++Aa+ g+l v +Ll qGA++ + d+ KIAA1636 973 QGRTPLMMAASEGHLGTVDFLLAQGASIALMDK 1005 PF00023.20.ls: domain 8 of 11, from 973 to 1005: score 37.3, E = 5e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TPL++Aa+ g+l v +Ll qGA++ + d+ KIAA1636 973 QGRTPLMMAASEGHLGTVDFLLAQGASIALMDK 1005 PF00023.20.ls: domain 9 of 11, from 1006 to 1038: score 33.0, E = 9.6e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G T+L +A+l+g+l+vv+ L+++GA ++ d+ KIAA1636 1006 EGLTALSWACLKGHLSVVRSLVDNGAATDHADK 1038 PF00023.20.fs: domain 9 of 11, from 1006 to 1038: score 31.0, E = 1.2e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G T+L +A+l+g+l+vv+ L+++GA ++ d+ KIAA1636 1006 EGLTALSWACLKGHLSVVRSLVDNGAATDHADK 1038 PF00023.20.fs: domain 10 of 11, from 1039 to 1071: score 36.8, E = 2.9e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPL lAa++g++evv++L+++GA + ++d KIAA1636 1039 NGRTPLDLAAFYGDAEVVQFLVDHGAMIEHVDY 1071 PF00023.20.ls: domain 10 of 11, from 1039 to 1071: score 38.8, E = 1.8e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPL lAa++g++evv++L+++GA + ++d KIAA1636 1039 NGRTPLDLAAFYGDAEVVQFLVDHGAMIEHVDY 1071 PF00023.20.ls: domain 11 of 11, from 1072 to 1104: score 15.2, E = 0.19 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ PL A+ + n++vv Ll++GA + + KIAA1636 1072 SGMRPLDRAVGCRNTSVVVTLLKKGAKIGPATW 1104 PF00023.20.fs: domain 11 of 11, from 1072 to 1104: score 13.2, E = 0.011 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ PL A+ + n++vv Ll++GA + + KIAA1636 1072 SGMRPLDRAVGCRNTSVVVTLLKKGAKIGPATW 1104 PF00515.18.fs: domain 2 of 3, from 1165 to 1198: score 16.3, E = 0.0013 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + + nl + +k++++ A+e+ +kALel P+ KIAA1636 1165 VSLLLNLSRCRRKMNDFGMAEEFATKALELKPKS 1198 PF00515.18.ls: domain 2 of 3, from 1165 to 1198: score 18.3, E = 0.026 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + + nl + +k++++ A+e+ +kALel P+ KIAA1636 1165 VSLLLNLSRCRRKMNDFGMAEEFATKALELKPKS 1198 PF00515.18.fs: domain 3 of 3, from 1199 to 1232: score 28.6, E = 3.8e-07 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +eayy ++ a ++ ++ +A+e++++A++l Pnn KIAA1636 1199 YEAYYARARAKRSSRQFAAALEDLNEAIKLCPNN 1232 PF07719.7.fs: domain 3 of 3, from 1199 to 1232: score 27.0, E = 1.5e-06 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ea+y++++a + ++++ Ale++++A++l Pnn KIAA1636 1199 YEAYYARARAKRSSRQFAAALEDLNEAIKLCPNN 1232 PF07719.7.ls: domain 3 of 3, from 1199 to 1232: score 29.0, E = 1.5e-05 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ea+y++++a + ++++ Ale++++A++l Pnn KIAA1636 1199 YEAYYARARAKRSSRQFAAALEDLNEAIKLCPNN 1232 PF00515.18.ls: domain 3 of 3, from 1199 to 1232: score 30.6, E = 5e-06 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +eayy ++ a ++ ++ +A+e++++A++l Pnn KIAA1636 1199 YEAYYARARAKRSSRQFAAALEDLNEAIKLCPNN 1232 //