hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-08322456/chunk_1/iprscan-20080502-08322456.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1639 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00220 431.2 5.4e-125 2 SM00408 227.8 9.5e-64 5 SM00409 180.0 2.3e-49 5 SM00325 63.0 3.7e-14 1 SM00219 -18.9 5.8e-10 1 SM00233 48.1 1.1e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/5 1 82 [. 1 58 [] 19.2 0.59 SM00408 1/5 8 71 .. 1 56 [] 21.7 0.03 SM00325 1/1 312 492 .. 1 211 [] 63.0 3.7e-14 SM00233 1/1 512 622 .. 1 82 [] 48.1 1.1e-09 SM00409 2/5 636 723 .. 1 58 [] 35.2 8.8e-06 SM00408 2/5 642 710 .. 1 56 [] 56.7 2.9e-12 SM00409 3/5 730 816 .. 1 58 [] 44.5 1.4e-08 SM00408 3/5 736 805 .. 1 56 [] 55.7 5.9e-12 SM00409 4/5 979 1063 .. 1 58 [] 42.1 7.6e-08 SM00408 4/5 985 1052 .. 1 56 [] 41.8 9.1e-08 SM00219 1/1 1084 1337 .. 1 280 [] -18.9 5.8e-10 SM00220 1/2 1084 1337 .. 1 231 [] 284.4 8.6e-81 SM00409 5/5 2085 2171 .. 1 58 [] 39.0 6.3e-07 SM00408 5/5 2091 2159 .. 1 56 [] 51.8 8.9e-11 SM00220 2/2 2288 2540 .. 1 231 [] 146.8 2.2e-39 Alignments of top-scoring domains: SM00409: domain 1 of 5, from 1 to 82: score 19.2, E = 0.59 *->ppvtvkeGesvtLtC.as.....titWy................... +s+t+ ++++ + +t++W++ ++ ++++++ + KIAA1639 1 --------SSITFFVkVEgrpvpTVHWLreeaergvlwigpdtpgyt 39 .........LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<- ++ ++++L++ +v ++++ GtYtC a++ +g+a + ++ L+V+ KIAA1639 40 vassaqqhsLVLlDVGRQHQ---GTYTCIASnaAGQALC--SASLHVS 82 * KIAA1639 - - SM00408: domain 1 of 5, from 8 to 71: score 21.7, E = 0.03 *->leGqsVtLtCpasgdpvpnItWlk.gkplp................. +++g+pvp+++Wl+++ + ++++++ + ++ KIAA1639 8 ----------KVEGRPVPTVHWLReEAERGvlwigpdtpgytvassa 44 sgstLtiknvsleDsGlYtCvArNsvg<-* +L + +v + + G+YtC+A+N++g KIAA1639 45 QQHSLVLLDVGRQHQGTYTCIASNAAG 71 SM00325: domain 1 of 1, from 312 to 492: score 63.0, E = 3.7e-14 *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl v++ELl +E+++V++L+ l+ + l+ L+++ +p+ ++ + KIAA1639 312 VIQELLSSEQAFVEELQFLQSHHLQHLERCPH---VPIAVAGQKAVI 355 FgpNieeiyefH.rrFLdeLeerveewllskdlKsernsviedsgerigd F N+ +i +fH+++FL+eL ++ d ++++ KIAA1639 356 FR-NVRDIGRFHsSSFLQELQQC-------------------DTDDDVAM 385 vFlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeies +F+k+ + f+ Y e+ +a+++ a q+f+k+ + KIAA1639 386 CFIKN---QAAFEQYLEFLVGRVQAESVVVS-------TAIQEFYKKYAE 425 kpncrsk.sea.rltLeslLikPvQRltkYpLLLkellkhtppdhedred ++ + +s + +L+++L +Pv R+ +Y+ LLkel+++ ++ KIAA1639 426 EALLAGDpSQPpPPPLQHYLEQPVERVQRYQALLKELIRNKARNRQNCAL 475 LkkAleaikelasqvNe<-* L++A++++ l+++ + KIAA1639 476 LEQAYAVVSALPQRAEN 492 SM00233: domain 1 of 1, from 512 to 622: score 48.1, E = 1.1e-09 *->vikeGwLlkks.......k.swkkryfvLfngvLlyyksk....... +i++G+ ++++ ++ + + + r+++Lf++ L+++k+++++++++ KIAA1639 512 PIRQGHFIVWEgapgarmPwKGHNRHVFLFRNHLVICKPRrdsrtdt 558 ...kpkgsipLsgcsvre.p.....cFeivt.dr....tlllqAeseeer + + ++ Ls++ +++++++++++Fe++ + +++ + +llqA+++ + KIAA1639 559 vsyVFRNMMKLSSIDLNDqVegddrAFEVWQeREdsvrKYLLQARTAIIK 608 eeWvealqsaiaka<-* +Wv+ ++ ++++ KIAA1639 609 SSWVKEICGIQQRL 622 SM00409: domain 2 of 5, from 636 to 723: score 35.2, E = 8.8e-06 *->pp.vtvkeGesvtLtC.as.....titWy.................. + t+ +Ge+v+L C++++++++ i+Wy++++ + ++++ ++ KIAA1639 636 LAdCTAELGETVKLACrVTgtpkpVISWYkdgkavqvdphhiliedp 682 .....LtI.nvtpeDsesgGtYtCaat....sgsasseqgttLtVl<-* +++ L+++++t Ds G Y C a + ++ s+ + + ++V KIAA1639 683 dgscaLILdSLTGVDS---GQYMCFAAsaagNCSTLG--KILVQVP 723 SM00408: domain 2 of 5, from 642 to 710: score 56.7, E = 2.9e-12 *->leGqsVtLtCpasgdpvpnItWlk.gkplp............sgstL + G++V L C+++g p p I+W+k+gk ++ ++++ ++++++ L KIAA1639 642 ELGETVKLACRVTGTPKPVISWYKdGKAVQvdphhiliedpdGSCAL 688 tiknvsleDsGlYtCvArNsvg<-* + + + DsG Y C+A +++g KIAA1639 689 ILDSLTGVDSGQYMCFAASAAG 710 SM00409: domain 3 of 5, from 730 to 816: score 44.5, E = 1.4e-08 *->pp.vtvkeGesvtLtC.as.....titWy.................. + +eGe++++tC++++ + ++i+Wy+++ +++++ ++ + + KIAA1639 730 VRaSPFVEGEDAQFTCtIEgapypQIRWYkdgallttgnkfqtlsep 776 ......LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +++ L+I+ +++eD G Y C+ ++ gsa + +++L+++ KIAA1639 777 rsgllvLVIrAASKEDL---GLYECELVnrLGSARA--SAELRIQ 816 SM00408: domain 3 of 5, from 736 to 805: score 55.7, E = 5.9e-12 *->leGqsVtLtCpasgdpvpnItWlk.gkplp.............sgst eG+++++tC +g+p p+I+W+k+g l ++++ ++ ++++++ KIAA1639 736 VEGEDAQFTCTIEGAPYPQIRWYKdGALLTtgnkfqtlseprsGLLV 782 LtiknvsleDsGlYtCvArNsvg<-* L i+ +s+eD GlY+C+ N+ g KIAA1639 783 LVIRAASKEDLGLYECELVNRLG 805 SM00409: domain 4 of 5, from 979 to 1063: score 42.1, E = 7.6e-08 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++v ++ G++++++ +++++ +++tWy+++ + ++++ ++++ + KIAA1639 979 IEdVQAQTGGTAQFEAiIEgdpqpSVTWYkdsvqlvdstrlsqqqeg 1025 ....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++ +L++++v D+ G+YtC a++++g++ + ++L Vl KIAA1639 1026 ttysLVLrHVASKDA---GVYTCLAQntGGQVLC--KAELLVL 1063 SM00408: domain 4 of 5, from 985 to 1052: score 41.8, E = 9.1e-08 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt + G++++++ + +gdp p++tW+k++ +l ++++ +++++++ +L KIAA1639 985 QTGGTAQFEAIIEGDPQPSVTWYKdSVQLVdstrlsqqqegTTYSLV 1031 iknvsleDsGlYtCvArNsvg<-* +++v+ D+G+YtC+A+N g KIAA1639 1032 LRHVASKDAGVYTCLAQNTGG 1052 SM00219: domain 1 of 1, from 1084 to 1337: score -18.9, E = 5.8e-10 *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda..keeFlrEak + ++++G+G FG V + + k+++i +A K + +++++ +rE KIAA1639 1084 YEVKEEIGRGVFGFVKRVQHKgnkILCAAKFIPLRSrtRAQAYRERD 1130 iMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyLrk i+ l +Hp + Ll + + l +++E+++ Lld+L + KIAA1639 1131 ILAAL--SHPLVTGLLDQFETR-------KTLILILELCSSEELLDRL-Y 1170 nrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk..vvK +++ ++ ++ + Q +G YL+s+++ H D+ N+L ++ ++ +K KIAA1639 1171 RKGVVTEAEVKVYIQQLVEGLHYLHSHGVLHLDIKPSNILMVHPAreDIK 1220 IsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdgkF I+DFG + +++ + ++ g+ + +PE ++ + KIAA1639 1221 ICDFGFAQNITPA-------ELQFSQY--GSPEFV-----SPEIIQQNPV 1256 tskSDVWSFGVlLWEiftl.GeqPYpgeiqqfmsneevleylkkGyRlpk +++SD+W+ GV + ++l++ +P g s++ l ++ +G+ KIAA1639 1257 SEASDIWAMGVISY--LSLtCSSPFAG-----ESDRATLLNVLEGRVSWS 1299 PendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel..verl<-* + + +++ d ++ ++ P RP+ +++ ++ + KIAA1639 1300 SPM-----AAHLSEDAKDFIKATLQRAPQARPSAAQClsHPWF 1337 SM00220: domain 1 of 2, from 1084 to 1337: score 284.4, E = 8.6e-81 *->YellkklGkGaFGkVylardkktgrlvAiKvik......erilrEik Ye+ +++G+G FG V+++++k+ + l+A K i+ +++++ +++rE++ KIAA1639 1084 YEVKEEIGRGVFGFVKRVQHKGNKILCAAKFIPlrsrtrAQAYRERD 1130 iLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrglr iL HP + L+d fe+++ l l++E+c+ +L+d+l ++g KIAA1639 1131 ILAAlSHPLVTGLLDQFETrKTLILILELCSS--EELLDRLYRKGV---- 1174 kvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds....hvKla +E e++ y++Q++++L YLHs+g++H D+KP+NiL+ ++ ++ +K++ KIAA1639 1175 --VTEaEVKVYIQQLVEGLHYLHSHGVLHLDIKPSNILMVHpareDIKIC 1222 DFGlArql......ttfvGTpeYmAPEvl...gYgkpavDiWSlGcilyE DFG+A +++ + + ++ G+pe+++PE++++++ + a+DiW+ G+i y KIAA1639 1223 DFGFAQNItpaelqFSQYGSPEFVSPEIIqqnPVSE-ASDIWAMGVISYL 1271 lltGkpPFp...qldlifkkig.............SpeakdLikklLvkd lt PF ++++ +++++++ ++ +++++ + S++akd+ik L++ KIAA1639 1272 SLTCSSPFAgesDRATLLNVLEgrvswsspmaahlSEDAKDFIKATLQRA 1321 PekRlta.eaLedeldikaHPff<-* P+ R++a ++L HP+f KIAA1639 1322 PQARPSAaQCLS-------HPWF 1337 SM00409: domain 5 of 5, from 2085 to 2171: score 39.0, E = 6.3e-07 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++ tv++G+svtL C++s + + tW++++ + ++++ + + KIAA1639 2085 LSdETVVLGQSVTLACqVSaqpaaQATWSkdgaplesssrvlisatl 2131 .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++ + LtI v +eD G+YtC +++ g+++ g+ + + KIAA1639 2132 knfqlLTIlVVVAEDL---GVYTCSVSnaLGTVTT-TGVLRKAE 2171 SM00408: domain 5 of 5, from 2091 to 2159: score 51.8, E = 8.9e-11 *->leGqsVtLtCpasgdpvpnItWlk.gkplp............sgstL GqsVtL C +s+ p+++ tW k+g pl+++++ + + ++ + L KIAA1639 2091 VLGQSVTLACQVSAQPAAQATWSKdGAPLEsssrvlisatlkNFQLL 2137 tiknvsleDsGlYtCvArNsvg<-* ti v eD G+YtC+++N+ g KIAA1639 2138 TILVVVAEDLGVYTCSVSNALG 2159 SM00220: domain 2 of 2, from 2288 to 2540: score 146.8, E = 2.2e-39 *->YellkklGkGaFGkVylardkktgrlvAiKvik......erilrEik + + ++ +G F++V+++++k +gr A K+i+ +++++ +lrE + KIAA1639 2288 FAFQTQIQRGRFSVVRQCWEKASGRALAAKIIPyhpkdkTAVLREYE 2334 iLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrglr Lk +HP++ +L+ ++ ++ +l l++E+c+G +L+ l +r + KIAA1639 2335 ALKGlRHPHLAQLHAAYLSpRHLVLILELCSG--PELLPCLAERAS---- 2378 kvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKlaDF +sE+e++ y++Q+lsa +YLH+q+I+H DL eN +++ + +K+ D KIAA1639 2379 --YSEsEVKDYLWQMLSATQYLHNQHILHLDLRSENMIITEynLLKVVDL 2426 GlArql...........ttfvGTpeYmAPEvl...gYgkpavDiWSlGci G A l++++ ++++ + + +e mAPE+l+++g + DiW++G++ KIAA1639 2427 GNAQSLsqekvlpsdkfKDY---LETMAPELLegqGAVP-QTDIWAIGVT 2472 lyElltGkpPFp.....qldlifkkig..........SpeakdLikklLv +++l+ + P ++++ ++l++ ++k + + ++ + + S a +++ L+ KIAA1639 2473 AFIMLSAEYPVSsegarDLQRGLRKGLvrlsrcyaglSGGAVAFLRSTLC 2522 kdPekRlta.eaLedeldikaHPff<-* P R+ a+ +L+ P++ KIAA1639 2523 AQPWGRPCAsSCLQ-------CPWL 2540 //