hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-08375097/chunk_1/iprscan-20080502-08375097.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1642 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00150 1040.4 0 16 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00150 1/16 47 147 .. 1 104 [] 99.5 3.9e-25 SM00150 2/16 153 256 .. 1 104 [] 77.4 1.8e-18 SM00150 3/16 262 385 .. 1 104 [] 38.1 1.2e-06 SM00150 4/16 391 493 .. 1 104 [] 53.7 2.3e-11 SM00150 5/16 499 599 .. 1 104 [] 88.7 6.8e-22 SM00150 6/16 605 700 .. 1 104 [] 5.3 2.8 SM00150 7/16 706 811 .. 1 104 [] 56.0 4.8e-12 SM00150 8/16 817 917 .. 1 104 [] 52.2 6.8e-11 SM00150 9/16 923 1022 .. 1 104 [] 73.1 3.5e-17 SM00150 10/16 1028 1127 .. 1 104 [] 47.1 2.4e-09 SM00150 11/16 1133 1233 .. 1 104 [] 91.2 1.2e-22 SM00150 12/16 1239 1339 .. 1 104 [] 96.8 2.5e-24 SM00150 13/16 1345 1446 .. 1 104 [] 87.5 1.6e-21 SM00150 14/16 1452 1554 .. 1 104 [] 51.6 1e-10 SM00150 15/16 1560 1660 .. 1 104 [] 80.3 2.4e-19 SM00150 16/16 1666 1916 .. 1 104 [] 42.0 7.9e-08 Alignments of top-scoring domains: SM00150: domain 1 of 16, from 47 to 147: score 99.5, E = 3.9e-25 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea q+F ++++ e+Wl+e ++l+s++++g l++vea +kkH+a+ea KIAA1642 47 QRFDHKVAMRESWLNENQRLVSQDNFG--YELPAVEAAMKKHEAIEA 91 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae ++aa+eerv+ + el+++L +e g +d + ++++ + ++W+ L l+ KIAA1642 92 DIAAYEERVQGVAELAQALAAE-GYYDIRRVAAQRDSVLRQWALLTGLVG 140 eRrqkLe<-* +Rr +Le KIAA1642 141 ARRTRLE 147 SM00150: domain 2 of 16, from 153 to 256: score 77.4, E = 1.8e-18 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea q+ ++++ + +W+ee++++l s + g ++l ++ +ll+kH le KIAA1642 153 QKVFQEMVYMVDWMEEMQAQLLSRECG--QHLVEADDLLQKHGLLEG 197 elaaheervdalnelgeqLiee..sghpdaeeIeerleelnerWeeLlel ++aa+ erv+aln+++ ++ + +++++ d + I +r+++++ +eL+e+ KIAA1642 198 DIAAQSERVEALNAAALRFSQLqgYQPCDPQVICNRVNHVHGCLAELQEQ 247 aeeRrqkLe<-* a++Rr+ Le KIAA1642 248 AARRRAELE 256 SM00150: domain 3 of 16, from 262 to 385: score 38.1, E = 1.2e-06 *->qqFlrdadeleaWleekeqllssedlg.............eskDles + +l++++e+e+W ++ke+ll+ g+ + + ++ ++++Dl+s KIAA1642 262 WALLQELEEAESWARDKERLLEAAGGGgaagaagaagtagGAHDLSS 308 veallkkHqaleaelaaheervdalnelgeqLiee.......sghpdaee +ll +H+ l+ el +++ +++ + ge+L+++++ ++++ + KIAA1642 309 TARLLAQHKILQGELGGRRALLQQALRCGEELVAAggavgpgADTVHLVG 358 IeerleelnerWeeLlelaeeRrqkLe<-* + er + ++rW++L+e+a++R+++L+ KIAA1642 359 LAERAASARRRWQRLEEAAARRERRLQ 385 SM00150: domain 4 of 16, from 391 to 493: score 53.7, E = 2.3e-11 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea +qF +d+d l++Wl+++ +l++ d+g +D++s ++l ++H al KIAA1642 391 HQFGADLDGLLDWLRDAYRLAAAGDFG--HDEASSRRLARQHRALTG 435 elaaheervdalnelgeqLiee.sghpdaeeIeerleelnerWeeLlela e++ah+ v+ l ++ L ++ +p +++ r+ e ++ ++e+ e a KIAA1642 436 EVEAHRGPVSGLRRQLATLGGAsGAGPLVVALQVRVVEAEQLFAEVTEVA 485 eeRrqkLe<-* + Rrq+L KIAA1642 486 ALRRQWLR 493 SM00150: domain 5 of 16, from 499 to 599: score 88.7, E = 6.8e-22 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea ++ + ++ e W++ekeq+l s+ ++ ++l++ve+ +++++ l++ KIAA1642 499 YRMFGEVHACELWIGEKEQWLLSMRVP--DSLDDVEVVQHRFESLDQ 543 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae e++ rv ++n++ ++L+e ghp ++e++ +++ln+rW+++ el+e KIAA1642 544 EMNSLMGRVLDVNHTVQELVEG-GHPSSDEVRSCQDHLNSRWNRIVELVE 592 eRrqkLe<-* +R++ KIAA1642 593 QRKEEMS 599 SM00150: domain 6 of 16, from 605 to 700: score 5.3, E = 2.8 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallk.kHqale + +++e+ a ++ek ++++s + + l+ ++ le KIAA1642 605 ENHVLEVAEVRAQVREKRRAVESAPRA--------GGALQwRLSGLE 643 aelaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlela a l+a e+r al e++ L e+ +++a+ + + eel ++W +L +a KIAA1642 644 AALQALEPRQAALLEEAALLAER-FPAQAARLHQGAEELGAEWGALASAA 692 eeRrqkLe<-* ++ +++ KIAA1642 693 QACGEAVA 700 SM00150: domain 7 of 16, from 706 to 811: score 56.0, E = 4.8e-12 *->qqFlrdadeleaWleeke..qllssedlgeskDlesveallkkHqal q+Fl+d+d +++Wl +++ + s +l+ ++le++ all +H al KIAA1642 706 QRFLHDLDAFLDWLVRAQeaAGGSEGPLP--NSLEEADALLARHAAL 750 eaelaaheervdalnelgeqLiee..sghpdaeeIeerleelnerWeeLl ++e++++ee + + ++ e+L+++++++ ++ e+l +l+ W++Ll KIAA1642 751 KEEVDQREEDYARIVAASEALLAAdgAELGPGLALDEWLPHLELGWHKLL 800 elaeeRrqkLe<-* l+e+Rr++L KIAA1642 801 GLWEARREALV 811 SM00150: domain 8 of 16, from 817 to 917: score 52.2, E = 6.8e-11 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea q Flrd+++++ l+++e +ls +l+ +++esve+ lk+H ++ + KIAA1642 817 QLFLRDLRQALVVLRNQEMALSGAELP--GTVESVEEALKQHRDFLT 861 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae ++ +++++ +++e L+++ g+ e+ +e +++l e+ +e + +a+ KIAA1642 862 TMELSQQKMQVAVQAAEGLLRQ-GNIYGEQAQEAVTRLLEKNQENQLRAQ 910 eRrqkLe<-* ++ qkL KIAA1642 911 QWMQKLH 917 SM00150: domain 9 of 16, from 923 to 1022: score 73.1, E = 3.5e-17 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea q+Flrd+ el+ W+ ek+ ++ + D + + + +Hqa++a KIAA1642 923 QHFLRDCHELDGWIHEKMLMARDGTR---EDNHKLHKRWLRHQAFMA 966 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae ela+++e +++++++g+qL++e +++ a++++++l e+++ W+eL+ ++ KIAA1642 967 ELAQNKEWLEKIEREGQQLMQE-KPELAASVRKKLGEIRQCWAELESTTQ 1015 eRrqkLe<-* ++ ++L KIAA1642 1016 AKARQLF 1022 SM00150: domain 10 of 16, from 1028 to 1127: score 47.1, E = 2.4e-09 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea q+ + +el++ l +e +l++ d+g +Dl++v+++lkk+q e KIAA1642 1028 DQLVQSFAELDKKLLHMESQLQDVDPG--GDLATVNSQLKKLQSMES 1072 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae ++++ +v +l+++ +L e ++ +e + er++++ er +Lle ++ KIAA1642 1073 QVEEWYREVGELQAQTAALPLE--PASKELVGERQNAVGERLVRLLEPLQ 1120 eRrqkLe<-* eRr+ L KIAA1642 1121 ERRRLLL 1127 SM00150: domain 11 of 16, from 1133 to 1233: score 91.2, E = 1.2e-22 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea +q +d+d+++aW++e +l+++++ g + l++v++ +kk q l++ KIAA1642 1133 HQVAHDLDDELAWVQERLPLAMQTERG--NGLQAVQQHIKKNQGLRR 1177 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae e++ah++r++++ e + +L + p+ae++++ le+l+++W+ L+e+ae KIAA1642 1178 EIQAHGPRLEEVLERAGALASL-RSPEAEAVRRGLEQLQSAWAGLREAAE 1226 eRrqkLe<-* +R+q L+ KIAA1642 1227 RRQQVLD 1233 SM00150: domain 12 of 16, from 1239 to 1339: score 96.8, E = 2.5e-24 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea +q++ d++e+eaWl+e+e l++sed g kD++s +llkkH +le+ KIAA1642 1239 EQYYFDVAEVEAWLGEQELLMMSEDKG--KDEQSTLQLLKKHLQLEQ 1283 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae ++++ee++ +l +++++L+e ghpd+e+I +r+ ++++ + +L+el e KIAA1642 1284 GVENYEESIAQLSRQCRALLEM-GHPDSEQISRRQSQVDRLYVALKELGE 1332 eRrqkLe<-* eRr +Le KIAA1642 1333 ERRVALE 1339 SM00150: domain 13 of 16, from 1345 to 1446: score 87.5, E = 1.6e-21 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea +q+ r + ele W+ eke+++ s +lg +D e+v +l++k+ ++ KIAA1642 1345 YQLSRQVSELEHWIAEKEVVAGSPELG--QDFEHVSVLQEKFSEFAS 1389 el.aaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlela e + a +er+ a+n++ ++Lie gh +a++ e+ + lne+W+eLlel+ KIAA1642 1390 ETgMAGRERLAAVNQMVDELIEC-GHTAAATMAEWKDGLNEAWAELLELM 1438 eeRrqkLe<-* R q L KIAA1642 1439 GTRAQLLA 1446 SM00150: domain 14 of 16, from 1452 to 1554: score 51.6, E = 1e-10 *->qqFlrdadeleaWleeke...qllssedlgeskDlesveallkkHqa ++F++da+el +eek ++ + l++ + + +s+ ++++ + a KIAA1642 1452 HKFFSDARELQGQIEEKRrrlPRLTTPPEP----RPSASSMQRTLRA 1494 leaelaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLle +e++l+ +v +l+e + qL + +++ae+I r +e+ + W+eLl KIAA1642 1495 FEHDLQLLVSQVRQLQEGAAQLRTVYAGEHAEAIASREQEVLQGWKELLS 1544 laeeRrqkLe<-* ++e+ r + KIAA1642 1545 ACEDARLHVS 1554 SM00150: domain 15 of 16, from 1560 to 1660: score 80.3, E = 2.4e-19 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea +F++ +++l++W++ + d + +D++sve+l+ Hq l++ KIAA1642 1560 LRFHSQVRDLLSWMDGIASQIGAADKP--RDVSSVEVLMNYHQGLKT 1604 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae el+a+ +++ +++elg+ L+ + + + a+eI+++l++l +r ee+ e+++ KIAA1642 1605 ELEARVPELTTCQELGRSLLLN-KSAMADEIQAQLDKLGTRKEEVSEKWD 1653 eRrqkLe<-* + +++L+ KIAA1642 1654 RHWEWLQ 1660 SM00150: domain 16 of 16, from 1666 to 1916: score 42.0, E = 7.9e-08 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea +qF ++a ++aWl+ +e+ll+s +lg ++++ve+l+++H+a+++ KIAA1642 1666 HQFAQEAVVADAWLTAQEPLLQSRELG--SSVDEVEQLIRRHEAFRK 1710 elaaheervdalne..lgeqLiee.sghpdaeeIeerl............ aa+eer+++l + ++ e++++e+s+ p + + ++ +++++ + KIAA1642 1711 AAAAWEERFSSLRRltTIEKIKAEqSKQPPTPLLGRKFfgdptelaakaa 1760 .................................................. + ++++ +++ ++ ++ +++ + + +++ + +++ ++++ +++ ++ KIAA1642 1761 pllrpggyergleplarrasdtlsaevrtrvgyvrqelkperlqpridrl 1810 .................................................. ++ +++ ++ + +++ +++ ++ ++ +++++++++ ++ ++ ++ KIAA1642 1811 peipgrvepaalpaapedaaetpatpaaaeqvrprperqesadraeelpr 1860 ..................................eelnerWeeLlelaee +++++++++ +++++ ++++++++++ +++ + r+e+ +++ e+ KIAA1642 1861 rrrperqesvdqseeaarrrrperqesaeheaahSLTLGRYEQMERRRER 1910 RrqkLe<-* R+++Le KIAA1642 1911 RERRLE 1916 //