hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-08393329/chunk_1/iprscan-20080502-08393329.nocrc
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Query sequence: KIAA1643
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01363.12.ls FYVE zinc finger                                96.7    6.4e-26   1
PF01363.12.fs FYVE zinc finger                                94.9    1.7e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01363.12.fs   1/1     918   984 ..     1    77 []    94.9  1.7e-25
PF01363.12.ls   1/1     918   984 ..     1    77 []    96.7  6.4e-26

Alignments of top-scoring domains:
PF01363.12.fs: domain 1 of 1, from 918 to 984: score 94.9, E = 1.7e-25
                   *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll
                      p WvpDe+  +C+ C+ pFt +++R+HHCR+CG+ifC+ Css++++l
    KIAA1643   918    PEWVPDEACGFCTACKAPFT-VIRRKHHCRSCGKIFCSRCSSHSAPL 963  

                   pylgiaallkndviekpvRVCdsCydrlnk<-*
                   p  g           kpvRVC +Cy  ++    
    KIAA1643   964 PRYGQ---------VKPVRVCTHCYMFHVT    984  

PF01363.12.ls: domain 1 of 1, from 918 to 984: score 96.7, E = 6.4e-26
                   *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll
                      p WvpDe+  +C+ C+ pFt +++R+HHCR+CG+ifC+ Css++++l
    KIAA1643   918    PEWVPDEACGFCTACKAPFT-VIRRKHHCRSCGKIFCSRCSSHSAPL 963  

                   pylgiaallkndviekpvRVCdsCydrlnk<-*
                   p  g           kpvRVC +Cy  ++    
    KIAA1643   964 PRYGQ---------VKPVRVCTHCYMFHVT    984  

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