# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/fg05002.fasta.nr -Q ../query/KIAA1648.ptfa /cdna2/lib/nr/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1648, 112 aa
 vs /cdna2/lib/nr/nr library

2693465022 residues in 7827732 sequences
 statistics sampled from 60000 to 7826979 sequences
  Expectation_n fit: rho(ln(x))= 4.7855+/-0.000189; mu= 7.7860+/- 0.011
 mean_var=67.6518+/-13.352, 0's: 48 Z-trim: 48  B-trim: 3282 in 2/63
 Lambda= 0.155932

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(7827732)
gi|55731444|emb|CAH92435.1| hypothetical protein [ ( 248)  636 151.0 7.7e-35


>>gi|55731444|emb|CAH92435.1| hypothetical protein [Pong  (248 aa)
 initn: 636 init1: 636 opt: 636  Z-score: 781.7  bits: 151.0 E(): 7.7e-35
Smith-Waterman score: 636;  94.624% identity (95.699% similar) in 93 aa overlap (20-112:156-248)

                          10        20        30        40         
KIAA16            GGIGVNTGMPELRHPRQEEVCTHTSQEETSLPGRTDDQPWLSLRSGGPP
                                     ::::::::::::: ::.::::::: :::::
gi|557 ILDALQGLLHLGGNWGKHWDAGAQASQTGGVCTHTSQEETSLPERTEDQPWLSLGSGGPP
         130       140       150       160       170       180     

      50        60        70        80        90       100         
KIAA16 RHTAHWVKEYPGGVRSMTHLPGTSTWGCQAATPAAVLTGPGRGTDPPLENDTSNIRMCQL
       ::::::::::::::::::: ::::::::::::: ::::::::::::::::::::::::::
gi|557 RHTAHWVKEYPGGVRSMTHPPGTSTWGCQAATPEAVLTGPGRGTDPPLENDTSNIRMCQL
         190       200       210       220       230       240     

     110  
KIAA16 DLC
       :::
gi|557 DLC
          




112 residues in 1 query   sequences
2693465022 residues in 7827732 library sequences
 Tcomplib [34.26] (8 proc)
 start: Thu Mar  5 08:30:19 2009 done: Thu Mar  5 08:36:34 2009
 Total Scan time: 942.350 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]