hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-08491775/chunk_1/iprscan-20080502-08491775.nocrc
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Query sequence: KIAA1649
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     42.0      5e-11   1
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     43.9    5.1e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/1     285   349 ..     1    74 []    42.0    5e-11
PF00076.12.ls   1/1     285   349 ..     1    74 []    43.9  5.1e-10

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 1, from 285 to 349: score 42.0, E = 5e-11
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                        V NL+p +teed+ +lF  +G  +++++v+          G+a V
    KIAA1649   285    MTVNNLHPRVTEEDIVELFCVCGALKRARLVH---------PGVAEV 322  

                   eFedeedAekAldalnGkelggrelrv<-*
                    F +++dA  A +++n++ l+g ++++   
    KIAA1649   323 VFVKKDDAITAYKKYNNRCLDGQPMKC    349  

PF00076.12.ls: domain 1 of 1, from 285 to 349: score 43.9, E = 5.1e-10
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                        V NL+p +teed+ +lF  +G  +++++v+          G+a V
    KIAA1649   285    MTVNNLHPRVTEEDIVELFCVCGALKRARLVH---------PGVAEV 322  

                   eFedeedAekAldalnGkelggrelrv<-*
                    F +++dA  A +++n++ l+g ++++   
    KIAA1649   323 VFVKKDDAITAYKKYNNRCLDGQPMKC    349  

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