# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj00563.fasta.huge -Q ../query/KIAA1651.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1651, 91 aa vs ./tmplib.25089 library 1987414 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.2553+/-0.00392; mu= 9.4467+/- 0.267 mean_var=56.6765+/-13.043, 0's: 0 Z-trim: 6 B-trim: 5 in 1/39 Lambda= 0.170362 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0500 ( 213 res) hg00404 ( 213) 283 76.7 3.2e-16 KIAA0377 ( 1412 res) hh00412 (1412) 182 52.6 3.8e-08 KIAA0891 ( 1371 res) hk08201 (1371) 127 39.1 0.00043 KIAA1447 ( 1721 res) fh04686 (1721) 125 38.7 0.00072 >>KIAA0500 ( 213 res) hg00404 (213 aa) initn: 256 init1: 136 opt: 283 Z-score: 383.1 bits: 76.7 E(): 3.2e-16 Smith-Waterman score: 283; 51.807% identity (84.337% similar) in 83 aa overlap (2-84:132-213) 10 20 30 KIAA16 GGMISVHCNLHLPGSSDSPVSASQVAGTTGA :.:..::.:.: ::.. :.:::.:::.::: KIAA05 FGLHVSTCPLHSDFFFKRQHLTLSPRLEYSGVITAHCSLKLLGSGNPPASASRVAGSTGA 110 120 130 140 150 160 40 50 60 70 80 90 KIAA16 YHDAWIIFVILVQSEFHLVVQAGLELLTSGDPPTMASQSAGITGISHRTQPDIALLDFEH : : .::. .... . :.:::::::.:::::..: :.::: :..: . :.. KIAA05 CHHAHLIFLSFIDTGL-TVAQAGLELLASGDPPALAYQNAGIIGMNHCAWPSL 170 180 190 200 210 >>KIAA0377 ( 1412 res) hh00412 (1412 aa) initn: 173 init1: 173 opt: 182 Z-score: 238.2 bits: 52.6 E(): 3.8e-08 Smith-Waterman score: 182; 45.333% identity (65.333% similar) in 75 aa overlap (9-83:1072-1146) 10 20 30 KIAA16 GGMISVHCNLHLPGSSDSPVSASQVAGTTGAYHDAWII ..: .::.: : .. . . KIAA03 LSLRQVSEFLSRVCQRHTDAQAQASAALFDSMHSSQASDNPFSPPRTLHSPPLQLQQRSE 1050 1060 1070 1080 1090 1100 40 50 60 70 80 90 KIAA16 FVILVQSEFHLVVQAGLELLTSGDPPTMASQSAGITGISHRTQPDIALLDFEH ....: : :::::::::.: :. :::::::::.::::::: KIAA03 KPPWLETRFCHVGQAGLELLTSSDLPASASQSAGITGVSHRTQPDSSGPSSTVSSAGPSS 1110 1120 1130 1140 1150 1160 KIAA03 PTTVDGNSQFGFSDQPSLNSHVAEEHQGLGLLQETPGSGAQELSIEGEQELFEPNQSPQV 1170 1180 1190 1200 1210 1220 >>KIAA0891 ( 1371 res) hk08201 (1371 aa) initn: 159 init1: 122 opt: 127 Z-score: 165.3 bits: 39.1 E(): 0.00043 Smith-Waterman score: 127; 65.625% identity (84.375% similar) in 32 aa overlap (50-81:101-132) 20 30 40 50 60 70 KIAA16 VSASQVAGTTGAYHDAWIIFVILVQSEFHLVVQAGLELLTSGDPPTMASQSAGITGISHR :.::::: :.:::: . ::..::::: :: KIAA08 EDTTSKKKQKDRANQESKDGDPRKETGSRYVAQAGLEPLASGDPSASASHAAGITGSRHR 80 90 100 110 120 130 80 90 KIAA16 TQPDIALLDFEH :. KIAA08 TRLFFPSSSGSASTPQEEQTKEGACEDPHDLLATPTPELLLDWRQSAEEVIVKLRVGVGP 140 150 160 170 180 190 >>KIAA1447 ( 1721 res) fh04686 (1721 aa) initn: 93 init1: 93 opt: 125 Z-score: 161.4 bits: 38.7 E(): 0.00072 Smith-Waterman score: 125; 38.202% identity (59.551% similar) in 89 aa overlap (5-89:269-356) 10 20 30 KIAA16 GGMISVHCNLHL-PGSSDSP---VSASQVAGTTG :. :.:.. :.:: .: : ... . : KIAA14 PAAGPTKLPPCCHPPDPKPPASSPTPPPRPSAPCTLNVCPASSPGPGSRVRSAEEKNGEG 240 250 260 270 280 290 40 50 60 70 80 90 KIAA16 AYHDAWIIFVILVQSEFHLVVQAGLELLTSGDPPTMASQSAGITGISHRTQPDIALLDFE : :: : .. : :..::::.:.:.:: : :::: ::: . .: : : KIAA14 QQSTADIITSEPV-ARAHSVAHAGLEFLASNDPSTSASQSFGITDLPPGYLRPMAGLGFS 300 310 320 330 340 350 KIAA16 H KIAA14 LPSDVHSSNLEDPETMQTTAPGAQPEPTRTFLPGEPPPCSPRSLEEPGLLSGAREATQDL 360 370 380 390 400 410 91 residues in 1 query sequences 1987414 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:11:44 2008 done: Thu Dec 18 15:11:44 2008 Total Scan time: 0.180 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]