# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/fj00563.fasta.nr -Q ../query/KIAA1651.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1651, 91 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826476 sequences Expectation_n fit: rho(ln(x))= 4.6604+/-0.000175; mu= 6.3889+/- 0.010 mean_var=55.3634+/-10.851, 0's: 50 Z-trim: 59 B-trim: 26 in 1/65 Lambda= 0.172370 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|119571903|gb|EAW51518.1| hCG2039129 [Homo sapie ( 89) 510 133.9 3.2e-30 gi|119606955|gb|EAW86549.1| hCG2039130 [Homo sapie ( 95) 506 132.9 6.8e-30 gi|34526292|dbj|BAC85220.1| unnamed protein produc ( 140) 416 110.6 5.1e-23 gi|14189960|gb|AAK55521.1|AF305818_1 PRO0764 [Homo ( 133) 382 102.1 1.7e-20 gi|10437485|dbj|BAB15056.1| unnamed protein produc ( 127) 381 101.9 1.9e-20 gi|21753371|dbj|BAC04333.1| unnamed protein produc ( 129) 374 100.1 6.6e-20 gi|119577496|gb|EAW57092.1| hCG1995581 [Homo sapie ( 230) 368 98.8 3e-19 gi|119609528|gb|EAW89122.1| hCG2039054 [Homo sapie ( 96) 363 97.3 3.5e-19 gi|21757775|dbj|BAC05191.1| unnamed protein produc ( 179) 365 98.0 4e-19 gi|119631865|gb|EAX11460.1| hCG2038446 [Homo sapie ( 135) 363 97.4 4.6e-19 gi|10437569|dbj|BAB15071.1| unnamed protein produc ( 171) 362 97.2 6.5e-19 gi|119588406|gb|EAW68000.1| hypothetical protein F ( 969) 367 99.0 1.1e-18 gi|34526288|dbj|BAC85219.1| unnamed protein produc ( 150) 357 96.0 1.4e-18 gi|114637314|ref|XP_001163466.1| PREDICTED: hypoth (1301) 367 99.1 1.4e-18 gi|119588408|gb|EAW68002.1| hypothetical protein F (1301) 367 99.1 1.4e-18 gi|34531772|dbj|BAC86222.1| unnamed protein produc ( 164) 357 96.0 1.5e-18 gi|34527205|dbj|BAC85346.1| unnamed protein produc ( 153) 356 95.7 1.7e-18 gi|21752596|dbj|BAC04217.1| unnamed protein produc ( 224) 355 95.6 2.7e-18 gi|119586601|gb|EAW66197.1| chromosome 14 open rea ( 228) 354 95.3 3.3e-18 gi|119625173|gb|EAX04768.1| hCG2039105 [Homo sapie ( 115) 349 93.9 4.5e-18 gi|119601085|gb|EAW80679.1| hCG1660224, isoform CR ( 131) 345 92.9 9.9e-18 gi|90081880|dbj|BAE90221.1| unnamed protein produc ( 127) 342 92.2 1.6e-17 gi|119626996|gb|EAX06591.1| hCG2039110 [Homo sapie ( 103) 338 91.1 2.7e-17 gi|119628534|gb|EAX08129.1| hCG2038166 [Homo sapie ( 134) 339 91.4 2.8e-17 gi|119568691|gb|EAW48306.1| hCG2038961 [Homo sapie ( 120) 338 91.2 3.1e-17 gi|90080459|dbj|BAE89711.1| unnamed protein produc ( 136) 337 91.0 4.1e-17 gi|119585041|gb|EAW64637.1| hCG2039009 [Homo sapie ( 120) 336 90.7 4.4e-17 gi|34526231|dbj|BAC85205.1| unnamed protein produc ( 128) 336 90.7 4.6e-17 gi|9280152|dbj|BAB01630.1| unnamed portein product ( 115) 335 90.4 5e-17 gi|119576138|gb|EAW55734.1| hCG2038067 [Homo sapie ( 129) 334 90.2 6.5e-17 gi|119589359|gb|EAW68953.1| hCG1814039 [Homo sapie ( 110) 333 89.9 6.8e-17 gi|11493463|gb|AAG35505.1|AF130117_38 PRO2852 [Hom ( 169) 335 90.5 6.8e-17 gi|119578875|gb|EAW58471.1| hCG2033684 [Homo sapie ( 169) 335 90.5 6.8e-17 gi|90086203|dbj|BAE91654.1| unnamed protein produc ( 115) 333 89.9 7.1e-17 gi|119604984|gb|EAW84578.1| hypothetical protein F ( 119) 332 89.7 8.6e-17 gi|119601568|gb|EAW81162.1| hCG1814203 [Homo sapie ( 162) 329 89.0 1.9e-16 gi|119572479|gb|EAW52094.1| hCG1735644 [Homo sapie ( 141) 328 88.7 2e-16 gi|74729617|sp|Q8N976.1|YG039_HUMAN RecName: Full= ( 141) 328 88.7 2e-16 gi|119596007|gb|EAW75601.1| hCG2042258 [Homo sapie ( 106) 326 88.1 2.2e-16 gi|119614621|gb|EAW94215.1| hCG1820974 [Homo sapie ( 143) 326 88.2 2.8e-16 gi|119631639|gb|EAX11234.1| hCG1652138, isoform CR ( 96) 324 87.6 2.9e-16 gi|74750922|sp|Q8N2A0.1|CX062_HUMAN RecName: Full= ( 174) 324 87.8 4.6e-16 gi|26449229|dbj|BAC41742.1| hypothetical protein [ ( 93) 319 86.4 6.6e-16 gi|119626707|gb|EAX06302.1| hCG2038847 [Homo sapie ( 159) 321 87.0 7.2e-16 gi|7020625|dbj|BAA91205.1| unnamed protein product ( 239) 321 87.1 1e-15 gi|222875348|gb|EEF12479.1| predicted protein [Pop ( 108) 316 85.7 1.3e-15 gi|119578354|gb|EAW57950.1| hypothetical protein F ( 320) 321 87.2 1.3e-15 gi|119606582|gb|EAW86176.1| hCG2038497 [Homo sapie ( 114) 316 85.7 1.3e-15 gi|119622549|gb|EAX02144.1| hCG1991981 [Homo sapie ( 136) 313 85.0 2.5e-15 gi|119617097|gb|EAW96691.1| hCG2014622 [Homo sapie ( 97) 311 84.4 2.7e-15 >>gi|119571903|gb|EAW51518.1| hCG2039129 [Homo sapiens] (89 aa) initn: 510 init1: 510 opt: 510 Z-score: 698.7 bits: 133.9 E(): 3.2e-30 Smith-Waterman score: 510; 89.888% identity (93.258% similar) in 89 aa overlap (3-91:1-89) 10 20 30 40 50 60 KIAA16 GGMISVHCNLHLPGSSDSPVSASQVAGTTGAYHDAWIIFVILVQSEFHLVVQAGLELLTS :: ::::::::::::::::: ::: ::::.: : .:::.::::::: ::::::::::: gi|119 MIWVHCNLHLPGSSDSPVSAPQVAKTTGAHHHACLIFVFLVQSEFHPVVQAGLELLTS 10 20 30 40 50 70 80 90 KIAA16 GDPPTMASQSAGITGISHRTQPDIALLDFEH ::::::::::::::::::::::::::::::: gi|119 GDPPTMASQSAGITGISHRTQPDIALLDFEH 60 70 80 >>gi|119606955|gb|EAW86549.1| hCG2039130 [Homo sapiens] (95 aa) initn: 506 init1: 506 opt: 506 Z-score: 692.9 bits: 132.9 E(): 6.8e-30 Smith-Waterman score: 506; 85.714% identity (91.209% similar) in 91 aa overlap (1-91:5-95) 10 20 30 40 50 KIAA16 GGMISVHCNLHLPGSSDSPVSASQVAGTTGAYHDAWIIFVILVQSEFHLVVQAGLE :::: :::::.::::::::::: ::: ::::.: ::. ::.::::::: :::::.: gi|119 MLEWGGMIWVHCNLQLPGSSDSPVSAPQVARTTGAHHHAWLTFVFLVQSEFHPVVQAGIE 10 20 30 40 50 60 60 70 80 90 KIAA16 LLTSGDPPTMASQSAGITGISHRTQPDIALLDFEH ::::::::::::::: :::::::: :::::::::: gi|119 LLTSGDPPTMASQSAVITGISHRTLPDIALLDFEH 70 80 90 >>gi|34526292|dbj|BAC85220.1| unnamed protein product [H (140 aa) initn: 481 init1: 409 opt: 416 Z-score: 569.6 bits: 110.6 E(): 5.1e-23 Smith-Waterman score: 416; 72.941% identity (88.235% similar) in 85 aa overlap (2-86:40-124) 10 20 30 KIAA16 GGMISVHCNLHLPGSSDSPVSASQVAGTTGA : ::.::::::::::: :.::::::::::: gi|345 PQKWFFFLLLFVCFFVLRQSLALLPKLECRGTISAHCNLHLPGSSDFPASASQVAGTTGA 10 20 30 40 50 60 40 50 60 70 80 90 KIAA16 YHDAWIIFVILVQSEFHLVVQAGLELLTSGDPPTMASQSAGITGISHRTQPDIALLDFEH : ::.:::.::.. :: : : :::::::.::::.:::::::::.:::. : ... gi|345 CHHAWLIFVFLVEAGFHHVGQDGLELLTSNDPPTLASQSAGITGVSHRAWPAVVVKKATL 70 80 90 100 110 120 gi|345 SRLSELKFLLY 130 140 >>gi|14189960|gb|AAK55521.1|AF305818_1 PRO0764 [Homo sap (133 aa) initn: 382 init1: 382 opt: 382 Z-score: 524.2 bits: 102.1 E(): 1.7e-20 Smith-Waterman score: 382; 67.901% identity (87.654% similar) in 81 aa overlap (2-82:29-109) 10 20 30 KIAA16 GGMISVHCNLHLPGSSDSPVSASQVAGTTGAYH : ...:::.:::::::::.::: ::: ::. : gi|141 MYWHSCHPRPFPAESHCVTPAGVQWRDLGSLQTHCNIHLPGSSDSPASASWVAGITGTRH 10 20 30 40 50 60 40 50 60 70 80 90 KIAA16 DAWIIFVILVQSEFHLVVQAGLELLTSGDPPTMASQSAGITGISHRTQPDIALLDFEH .:.:::.:: . :: : ::::.::::::::. .::::::::.::..:: gi|141 HTWLIFVFLVVTGFHHVGQAGLKLLTSGDPPSSSSQSAGITGVSHHAQPYSCIFFFFFFE 70 80 90 100 110 120 gi|141 MESESHPVAQGGV 130 >>gi|10437485|dbj|BAB15056.1| unnamed protein product [H (127 aa) initn: 360 init1: 360 opt: 381 Z-score: 523.1 bits: 101.9 E(): 1.9e-20 Smith-Waterman score: 381; 64.773% identity (85.227% similar) in 88 aa overlap (4-91:24-111) 10 20 30 40 KIAA16 GGMISVHCNLHLPGSSDSPVSASQVAGTTGAYHDAWIIFV ::.:::::: :::.:::.:: ::::::. : :.::: gi|104 MKNYYYFLGQGLTLSPRLECSSTISAHCNLHLLGSSNSPVAASPVAGTTGTCHHDWLIFV 10 20 30 40 50 60 50 60 70 80 90 KIAA16 ILVQSEFHLVVQAGLELLTSGDPPTMASQSAGITGISHRTQPDIALLDFEH .::.. :: . :.:::.::::::::.::.::::::.:: . : . : :..: gi|104 FLVETGFHHIGQTGLEFLTSGDPPTLASKSAGITGVSHCAWPTFLLNDMRHSFNKNLVII 70 80 90 100 110 120 gi|104 FYVPAIS >>gi|21753371|dbj|BAC04333.1| unnamed protein product [H (129 aa) initn: 413 init1: 367 opt: 374 Z-score: 513.6 bits: 100.1 E(): 6.6e-20 Smith-Waterman score: 374; 62.921% identity (82.022% similar) in 89 aa overlap (1-89:33-121) 10 20 30 KIAA16 GGMISVHCNLHLPGSSDSPVSASQVAGTTG :: : :::: : ::::::.:::..:: :: gi|217 VHEECYSVIFFIVLFLFLRWSLPLSPRPECGGTTSDHCNLCLSGSSDSPASASRIAGITG 10 20 30 40 50 60 40 50 60 70 80 90 KIAA16 AYHDAWIIFVILVQSEFHLVVQAGLELLTSGDPPTMASQSAGITGISHRTQPDIALLDFE .:: ::..::.::. :: . :::::::::.::: ..:::: :::.:::..: . :. : gi|217 VYHHAWLLFVFLVEMGFHYIGQAGLELLTSSDPPILVSQSAVITGLSHRARPFFILFGFC 70 80 90 100 110 120 KIAA16 H gi|217 IKVMLVS >>gi|119577496|gb|EAW57092.1| hCG1995581 [Homo sapiens] (230 aa) initn: 426 init1: 361 opt: 368 Z-score: 501.9 bits: 98.8 E(): 3e-19 Smith-Waterman score: 368; 70.370% identity (83.951% similar) in 81 aa overlap (2-82:108-188) 10 20 30 KIAA16 GGMISVHCNLHLPGSSDSPVSASQVAGTTGA : ::..:::::::::: :.:::.::: ::. gi|119 HGSSPPEHSVGPVQGCVLFWFPLSPRLECSGAISAYCNLHLPGSSDPPISASRVAGITGV 80 90 100 110 120 130 40 50 60 70 80 90 KIAA16 YHDAWIIFVILVQSEFHLVVQAGLELLTSGDPPTMASQSAGITGISHRTQPDIALLDFEH .: : .:::.::. :: : :: ::::::::::. :::::::::.:: : : gi|119 HHHARLIFVFLVEMGFHHVGQADLELLTSGDPPASASQSAGITGVSHCTWPCFSSYFFLL 140 150 160 170 180 190 gi|119 FCLCGSPHPVPHLLSLHPHCSLCLLSLLFFLTR 200 210 220 230 >>gi|119609528|gb|EAW89122.1| hCG2039054 [Homo sapiens] (96 aa) initn: 397 init1: 363 opt: 363 Z-score: 500.7 bits: 97.3 E(): 3.5e-19 Smith-Waterman score: 363; 65.882% identity (87.059% similar) in 85 aa overlap (2-86:8-92) 10 20 30 40 50 KIAA16 GGMISVHCNLHLPGSSDSPVSASQVAGTTGAYHDAWIIFVILVQSEFHLVVQAG ::: .:::..:::::.::.:::::: . : : : .:::.:... : : ::: gi|119 RQILECSGMILAHCNFRLPGSSNSPASASQVAVVIGLRHHAQLIFVFLAETGFCHVGQAG 10 20 30 40 50 60 60 70 80 90 KIAA16 LELLTSGDPPTMASQSAGITGISHRTQPDIALLDFEH ::::::.:::..:::::::::.::::::.:.. gi|119 LELLTSNDPPSLASQSAGITGVSHRTQPSITFAPTF 70 80 90 >>gi|21757775|dbj|BAC05191.1| unnamed protein product [H (179 aa) initn: 397 init1: 356 opt: 365 Z-score: 499.5 bits: 98.0 E(): 4e-19 Smith-Waterman score: 365; 63.953% identity (82.558% similar) in 86 aa overlap (2-87:93-178) 10 20 30 KIAA16 GGMISVHCNLHLPGSSDSPVSASQVAGTTGA : : ..:::.:::.::::::::::: :: gi|217 GLEVFLILDFGILFFFGDSVLLLLPRLECNGAILARCNLRLPGTSDSPVSASQVARITGM 70 80 90 100 110 120 40 50 60 70 80 90 KIAA16 YHDAWIIFVILVQSEFHLVVQAGLELLTSGDPPTMASQSAGITGISHRTQPDIALLDFEH : ::.::. ::. :: : ::: :::::::::..:::.::::: :..:::.... gi|217 RHHAWLIFLYLVEMGFHHVSQAGCELLTSGDPPALASQNAGITGGHHHAQPDFGIFS 130 140 150 160 170 >>gi|119631865|gb|EAX11460.1| hCG2038446 [Homo sapiens] (135 aa) initn: 363 init1: 363 opt: 363 Z-score: 498.5 bits: 97.4 E(): 4.6e-19 Smith-Waterman score: 363; 72.727% identity (87.013% similar) in 77 aa overlap (2-78:59-135) 10 20 30 KIAA16 GGMISVHCNLHLPGSSDSPVSASQVAGTTGA : : .::::.::::.:::.::: ::: ::: gi|119 CIMLPCFFFFFFFFLMLRWSLALSPRLECSGRILAHCNLRLPGSNDSPASASPVAGITGA 30 40 50 60 70 80 40 50 60 70 80 90 KIAA16 YHDAWIIFVILVQSEFHLVVQAGLELLTSGDPPTMASQSAGITGISHRTQPDIALLDFEH : : .:::.::.. :: ::::::.::::::::: ::::.::::.:: gi|119 CHHAQLIFVFLVETGFHHVVQAGLDLLTSGDPPTSASQSTGITGVSH 90 100 110 120 130 91 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Thu Mar 5 08:44:40 2009 done: Thu Mar 5 08:51:02 2009 Total Scan time: 873.930 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]