hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-09220216/chunk_1/iprscan-20080502-09220216.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1669 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF04130.4.fs Spc97 / Spc98 family 349.0 5e-103 3 PF04130.4.ls Spc97 / Spc98 family 116.4 7.7e-32 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF04130.4.fs 1/3 320 1092 .. 1 456 [. 293.2 1.2e-86 PF04130.4.ls 1/1 320 1239 .. 1 784 [] 116.4 7.7e-32 PF04130.4.fs 3/3 1156 1405 .] 385 457 .. 37.1 3e-11 Alignments of top-scoring domains: PF04130.4.fs: domain 1 of 3, from 320 to 1092: score 293.2, E = 1.2e-86 *->LlrdlLYaLlGidGkyikfnneidYmDrNrnkneasateafklrvqi L++d+L++L+G+ +++++ + + + + +k v KIAA1669 320 LVKDVLNVLIGVVSATFSLCQ-------------PAQAFVVKRGVHV 353 skflprslrsllrrllelGlyYqsLieiareilsvekFiekssgfneirk s p s++sll++++e+G+ Y+ ++++F+ + ++++ KIAA1669 354 SGASPESISSLLSEVAEYGTCYT----------RLSHFSLQPVLDSLY-- 391 rsasqlenkesvGlvgqAlcaaLseeLqdYyaliaqlEqqlrddlslsLf s Glv+qA++++L+ +Lq+Y+a++++++ l KIAA1669 392 ----------SKGLVFQAFTSGLRRYLQYYRACVLSTPPTL--------- 422 dlallslktdassskkslslrrLlrwlqpplsrlreLavskelilsvvlq + l++ +L+ +l ++l++l+eL+ + +l + KIAA1669 423 ---------------SLLTIGFLFKKLGRQLRYLAELC-GVGAVLPGT-- 454 iGkllnkiiNkasdklkvlkGgelLsllqFykfakekhGDpevrkllekL + + ++++G++lLs+l y +a+ ++++ e +++l++L KIAA1669 455 ---------CGGGPRAAFPTGVKLLSYL--YQEALHNCSN-EHYPVLLSL 492 LteisgPyykmlenWiykGeLeDtygEFFIkeneditsmslQvenskkyl L++ ++Py++++ +W+y+G+++D ygEF+I+ n ++ s++ KIAA1669 493 LKTSCEPYTRFIHDWVYSGVFRDAYGEFMIQVNHEYLSFR---------- 532 eeleklillkpedksdryWhkkYkLrp....dmiPsFlpmdlAnkILltG ++ yW+++Y+L++++ +d++P Fl+ ++A +I+ +G KIAA1669 533 --------------DKLYWTHGYVLISkeveDCVPVFLK-HIAHDIYVCG 567 KslNfLrecckelnikwsqepneiis........................ K++N+L+ cc++++ +ws+ p+++is + ++ ++ +++ ++ ++ KIAA1669 568 KTINLLKLCCPRHYLCWSDVPVPRISvifsleelkeiekdcavyvgrmer 617 .................................................. ++++ ++++++ + + +++ + ++ ++ + ++++ +++ + KIAA1669 618 varhssvskeekelrmeiakqeliahareaasrvlsalsdrqmsermald 667 .................................................. +++++ ++ +++ +++++++ ++++ +++ + ++ ++++++ ++ + KIAA1669 668 arkreqfqrlkeqfvkdqerrqaarqeeldddfsyarelrdrerrlksle 717 .................................................. ++ +++ ++ ++ ++ + + +++++ + ++++ ++ + + +++ KIAA1669 718 eelerkarqalvdhysklsaeaarreqkalwriqrhrlesarlrfllede 767 .................................................. ++ ++ + ++ ++++++++ + +++ +++++++++++++ ++++ + KIAA1669 768 khiqemlkavseahqpqeppdvllsvhpqvtspgpehpeggqgcdsgsae 817 .................................................. ++++ ++ ++++ ++++ ++ + ++++ ++ ++ ++ +++ + ++ KIAA1669 818 qhspawdgwnrpglltpqplkplavgaggrglqqaegarpfsdslsigdf 867 .................................................. + +++ +++ +++ + + ++ + + +++ +++ + ++++++++ KIAA1669 868 lpvgpgaepsvqtgmvpllevalqtinldlppsapgeapaaastqpsrpq 917 .................................................. + + ++ ++ +++ +++ + + + ++++ + +++ ++ + ++ + KIAA1669 918 eydfstvlrpavatspapgplqaaecslgssglqlwedscgkmdacgsas 967 ......................................NevkdINvnidk +++ +++++++ ++++++++++ ++ ++++ +++ + +I + KIAA1669 968 retllpshpprraaleegssqpterlfgqvsggglptgDYASEIAPTRPR 1017 nsdtnqssdssilisddvidkrirlerlNldqyissdHIkvgefasDlek +++ sd si + + v+d+ + +r N ++++s I ge sD+ + KIAA1669 1018 WNTHGHVSDASIRVGENVSDVAPTQPRWNTHGHVSNASISLGESVSDVAP 1067 SerrtsvgmnksiiNiKvkeNvsdl<-* +r +++ s i v+eNvsd+ KIAA1669 1068 TRPRWNIHGHVSNASIRVGENVSDV 1092 PF04130.4.ls: domain 1 of 1, from 320 to 1239: score 116.4, E = 7.7e-32 *->LlrdlLYaLlGidGkyikfnneidYmDrNrnkneasateafklrvqi L++d+L++L+G+ +++++ + + + + +k v KIAA1669 320 LVKDVLNVLIGVVSATFSLCQ-------------PAQAFVVKRGVHV 353 skflprslrsllrrllelGlyYqsLieiareilsvekFiekssgfneirk s p s++sll++++e+G+ Y+ ++++F+ + ++++ KIAA1669 354 SGASPESISSLLSEVAEYGTCYT----------RLSHFSLQPVLDSLY-- 391 rsasqlenkesvGlvgqAlcaaLseeLqdYyaliaqlEqqlrddlslsLf s Glv+qA++++L+ +Lq+Y+a++++++ l KIAA1669 392 ----------SKGLVFQAFTSGLRRYLQYYRACVLSTPPTL--------- 422 dlallslktdassskkslslrrLlrwlqpplsrlreLavskelilsvvlq + l++ +L+ +l ++l++l+eL+ + +l + KIAA1669 423 ---------------SLLTIGFLFKKLGRQLRYLAELC-GVGAVLPGT-- 454 iGkllnkiiNkasdklkvlkGgelLsllqFykfakekhGDpevrkllekL + + ++++G++lLs+l y +a+ ++++ e +++l++L KIAA1669 455 ---------CGGGPRAAFPTGVKLLSYL--YQEALHNCSN-EHYPVLLSL 492 LteisgPyykmlenWiykGeLeDtygEFFIkeneditsmslQvenskkyl L++ ++Py++++ +W+y+G+++D ygEF+I+ n ++ s++ KIAA1669 493 LKTSCEPYTRFIHDWVYSGVFRDAYGEFMIQVNHEYLSFR---------- 532 eeleklillkpedksdryWhkkYkLrp....dmiPsFlpmdlAnkILltG ++ yW+++Y+L++++ +d++P Fl+ ++A +I+ +G KIAA1669 533 --------------DKLYWTHGYVLISkeveDCVPVFLK-HIAHDIYVCG 567 KslNfLrecckelnikwsqepneiis........................ K++N+L+ cc++++ +ws+ p+++is + ++ ++ +++ ++ ++ KIAA1669 568 KTINLLKLCCPRHYLCWSDVPVPRISvifsleelkeiekdcavyvgrmer 617 .................................................. ++++ ++++++ + + +++ + ++ ++ + ++++ +++ + KIAA1669 618 varhssvskeekelrmeiakqeliahareaasrvlsalsdrqmsermald 667 .................................................. +++++ ++ +++ +++++++ ++++ +++ + ++ ++++++ ++ + KIAA1669 668 arkreqfqrlkeqfvkdqerrqaarqeeldddfsyarelrdrerrlksle 717 .................................................. ++ +++ ++ ++ ++ + + +++++ + ++++ ++ + + +++ KIAA1669 718 eelerkarqalvdhysklsaeaarreqkalwriqrhrlesarlrfllede 767 .................................................. ++ ++ + ++ ++++++++ + +++ +++++++++++++ ++++ + KIAA1669 768 khiqemlkavseahqpqeppdvllsvhpqvtspgpehpeggqgcdsgsae 817 .................................................. ++++ ++ ++++ ++++ ++ + ++++ ++ ++ ++ +++ + ++ KIAA1669 818 qhspawdgwnrpglltpqplkplavgaggrglqqaegarpfsdslsigdf 867 .................................................. + +++ +++ +++ + + ++ + + +++ +++ + ++++++++ KIAA1669 868 lpvgpgaepsvqtgmvpllevalqtinldlppsapgeapaaastqpsrpq 917 .................................................. + + ++ ++ +++ +++ + + + ++++ + +++ ++ + ++ + KIAA1669 918 eydfstvlrpavatspapgplqaaecslgssglqlwedscgkmdacgsas 967 ......................................NevkdINvnidk +++ +++++++ ++++++++++ ++ ++++ +++ + +I + KIAA1669 968 retllpshpprraaleegssqpterlfgqvsggglptgDYASEIAPTRPR 1017 nsdtnqssdssilisddvidkrirlerlNldqyissdHIkvgefasDlek +++ sd si + + v+d+ + +r N ++++s I ge sD+ + KIAA1669 1018 WNTHGHVSDASIRVGENVSDVAPTQPRWNTHGHVSNASISLGESVSDVAP 1067 SerrtsvgmnksiiNiKvkeNvsdleKrflkkyrdeyelesyeadksaee +r +++ s i v+eNvsd+ KIAA1669 1068 TRPRWNIHGHVSNASIRVGENVSDV------------------------- 1092 lkrlkllsyftdtsfeelIdeayeeaakhLldllveeydLlgHlkalKrY +++++ + + + +a ++ + + d+ ++ ++H KIAA1669 1093 ------APTRPRWNTHGHVSNASIRVGENVSDVAPTRPRWNTH------- 1129 LLLgqGDFiqafmdkakeeLGekkPhykknaiadllsNFFphkLtslLql + d + L ++ + ++ p + ++ KIAA1669 1130 ---------GHVSDASI-SL--GES-------VSDMA---PARPRW--NT 1155 AlrksnafdknnlrlesitievdplkskdvedllnriktneenntnnmNe + + s a ++ + ++ d + ++r KIAA1669 1156 HGHVSDASISL------------GESVSDMAPTRPR-------------- 1179 vnNenkavdavsdevlknldankkldsrvlepvpgdlnvtGWevfsLeYk +N++ ++++++rv e+v ++ KIAA1669 1180 -WNTH--------------GHVSDTSIRVGENVSDV-------------- 1200 vdwPLslvftpevFlskYlriFrfLwrlKrvehqLemkiWkehmfnkgsn p++ + +++++ KIAA1669 1201 ---------APIR----------------------S---------RCNTH 1210 nasrklsspikreiaqalrrssllReeMlhFvknlqyYilfeVIEsnWqe + s+ l e v+ + ++W+ KIAA1669 1211 --------------GHVSDASISLGEPVSDVVS----------TRPRWNT 1236 Hlq<-* H KIAA1669 1237 HVP 1239 PF04130.4.fs: domain 3 of 3, from 1156 to 1405: score 37.1, E = 3e-11 *->tnqssdssilisddvidkrirlerlNldqyissdHIkvgefasDlek +++ sd si + + v+d + +r N ++++s I+vge sD+ + KIAA1669 1156 HGHVSDASISLGESVSDMAPTRPRWNTHGHVSDTSIRVGENVSDVAP 1202 SerrtsvgmnksiiNiKvkeNvsdl......................... r +++ s i +e vsd+ +++++ +++ + ++++ + ++ KIAA1669 1203 IRSRCNTHGHVSDASISLGEPVSDVvstrprwnthvpippphmvlgalsp 1252 .................................................. + ++++++++++++++++++ + + +++ + +++ + + +++ +++++ KIAA1669 1253 eaepntprpqqsppghtsqsalslgaqstvldcgprlpvevgpslsspss 1302 .................................................. + ++++ + +++ ++ ++++ +++++++ +++ ++++ ++++ + ++ KIAA1669 1303 gcgegsisvgenvsdvaptqpwwpntpgdsvseelgqsrvaggqewdcgt 1352 .................................................. ++ + +++ + + + +++ +++ + ++++++ ++++ ++ + ++ KIAA1669 1353 hrawevggqwgwwhvkfpsgllvsqdlgccgghgrgclsqgrlgsvpatg 1402 ..e<-* +++ KIAA1669 1403 trP 1405 //