hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-09315765/chunk_1/iprscan-20080502-09315765.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1675 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 251.3 7.8e-71 10 SM00317 27.5 0.0018 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00317 1/1 94 227 .. 1 114 [] 27.5 0.0018 SM00355 1/10 240 260 .. 1 23 [] 13.2 10 SM00355 2/10 291 313 .. 1 23 [] 27.7 0.0016 SM00355 3/10 319 341 .. 1 23 [] 30.8 0.00019 SM00355 4/10 347 370 .. 1 23 [] 29.5 0.00047 SM00355 5/10 376 398 .. 1 23 [] 27.2 0.0023 SM00355 6/10 404 426 .. 1 23 [] 21.8 0.095 SM00355 7/10 433 460 .. 1 23 [] 12.7 12 SM00355 8/10 961 983 .. 1 23 [] 32.4 6e-05 SM00355 9/10 989 1012 .. 1 23 [] 30.8 0.00019 SM00355 10/10 1018 1040 .. 1 23 [] 25.3 0.0083 Alignments of top-scoring domains: SM00317: domain 1 of 1, from 94 to 227: score 27.5, E = 0.0018 *->aklevfkskgkGwGlratedIpkGefIleyvGeii............ + l+ + ++g+G+G++a++ ++Ge +++ v ++++ ++++ + KIAA1675 94 FELRESSIPGAGLGVWAKRKMEAGERLGPCV--VVpraaaketdfgw 138 ....................fylfd...ciDatranggkGniarfiNHSC ++ ++ + +++++ ++ ++ l +++ c+Da +a g G+++++i+ C KIAA1675 139 eqiltdvevspqegcitkisEDLGSekfCVDANQA--GAGSWLKYIRVAC 186 ePNcelifvevdgfdprgasdsadprivifAlrdIkpGEELtidYgddye + ++ + + +i++++++dI+pGEEL+++ + + KIAA1675 187 SCDDQNLTMCQ-----------ISEQIYYKVIKDIEPGEELLVHVKEGVY 225 ge<-* + KIAA1675 226 PL 227 SM00355: domain 1 of 10, from 240 to 260: score 13.2, E = 10 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ C++ f sk +L+rH + KIAA1675 240 FRCDE-CDELFQSKlDLRRHKK-- 260 SM00355: domain 2 of 10, from 291 to 313: score 27.7, E = 0.0016 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C+ C + f++k +L++Hm +H KIAA1675 291 HECKD-CERMFPNKySLEQHMVIH 313 SM00355: domain 3 of 10, from 319 to 341: score 30.8, E = 0.00019 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C+k f++k++L+rH+++H KIAA1675 319 YKCDQ-CPKAFNWKsNLIRHQMSH 341 SM00355: domain 4 of 10, from 347 to 370: score 29.5, E = 0.00047 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C+ C k+f+++++L+rH+r++H KIAA1675 347 FECEN-CVKVFTDPsNLQRHIRsQH 370 SM00355: domain 5 of 10, from 376 to 398: score 27.2, E = 0.0023 *->ykCpigCgksfssk.aLkrHmrvH<-* + Cp Cgk+f + + Lk+H +H KIAA1675 376 HACPD-CGKTFATSsGLKQHKHIH 398 SM00355: domain 6 of 10, from 404 to 426: score 21.8, E = 0.095 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ C+ks+++ ++L rH r+H KIAA1675 404 FICEV-CHKSYTQFsNLCRHKRMH 426 SM00355: domain 7 of 10, from 433 to 460: score 12.7, E = 12 *->ykCpigCgksfssk.aLkrHmr.....vH<-* kC+ Cg+ fs+ ++L++H r +++ H KIAA1675 433 IKCKD-CGQMFSTTsSLNKHRRfcegkNH 460 SM00355: domain 8 of 10, from 961 to 983: score 32.4, E = 6e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgk f++ +L+rH+r+H KIAA1675 961 YTCRY-CGKIFPRSaNLTRHLRTH 983 SM00355: domain 9 of 10, from 989 to 1012: score 30.8, E = 0.00019 *->ykCpigCgksfssk.aLkrHmr.vH<-* y+C++ C++sfs ++L+rH+r++H KIAA1675 989 YRCKY-CDRSFSISsNLQRHVRnIH 1012 SM00355: domain 10 of 10, from 1018 to 1040: score 25.3, E = 0.0083 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C+++f ++++L rH+++H KIAA1675 1018 FKCHL-CNRCFGQQtNLDRHLKKH 1040 //