hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-09352722/chunk_1/iprscan-20080502-09352722.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1677 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01344.15.ls Kelch motif 179.1 1e-50 5 PF01344.15.fs Kelch motif 169.1 1.1e-47 5 PF07707.5.ls BTB And C-terminal Kelch 73.5 6.4e-19 1 PF07707.5.fs BTB And C-terminal Kelch 71.5 1.1e-18 1 PF07646.5.ls Kelch motif 61.8 2e-15 4 PF07646.5.fs Kelch motif 57.6 8.4e-15 5 PF00651.21.fs BTB/POZ domain 27.7 3e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00651.21.fs 1/1 2 45 .. 80 135 .] 27.7 3e-07 PF07707.5.fs 1/1 50 154 .. 1 103 [] 71.5 1.1e-18 PF07707.5.ls 1/1 50 154 .. 1 103 [] 73.5 6.4e-19 PF01344.15.ls 1/5 233 283 .. 1 45 [] 26.5 8.7e-05 PF01344.15.fs 1/5 233 283 .. 1 45 [] 24.5 4e-06 PF01344.15.ls 2/5 285 330 .. 1 45 [] 37.8 3.4e-08 PF01344.15.fs 2/5 285 330 .. 1 45 [] 35.8 2.4e-09 PF07646.5.ls 2/4 285 330 .. 1 54 [] 14.7 0.31 PF01344.15.fs 3/5 332 392 .. 1 45 [] 17.9 0.0003 PF01344.15.ls 3/5 332 392 .. 1 45 [] 19.9 0.0086 PF07646.5.ls 3/4 394 446 .. 1 54 [] 22.2 0.0018 PF01344.15.fs 4/5 394 446 .. 1 45 [] 55.8 5.1e-15 PF01344.15.ls 4/5 394 446 .. 1 45 [] 57.8 3.3e-14 PF07646.5.fs 4/5 394 446 .. 1 54 [] 20.2 0.00012 PF01344.15.ls 5/5 448 494 .. 1 45 [] 37.1 5.6e-08 PF07646.5.fs 5/5 448 494 .. 1 54 [] 18.5 0.00036 PF01344.15.fs 5/5 448 494 .. 1 45 [] 35.1 3.9e-09 PF07646.5.ls 4/4 448 494 .. 1 54 [] 20.4 0.0061 Alignments of top-scoring domains: PF00651.21.fs: domain 1 of 1, from 2 to 45: score 27.7, E = 3e-07 *->lLefiYtgelsitqdqksPssckseenvedlLaaAadllqipslvda +L+f+Y g+++++ + +v+++L+aA + q+ +v+ KIAA1677 2 VLQFMYYGTIELS-----------MNTVHEILQAA-MYVQLIEVVKF 36 Ceefliksl<-* C++fl+ ++ KIAA1677 37 CCSFLLAKI 45 PF07707.5.fs: domain 1 of 1, from 50 to 154: score 71.5, E = 1.1e-18 *->CLgIrrfAday..gceeLaeaAdrfilqnFleVakseEFlq.Lskeq C I+r+ d ++ + e ++e+ d f+l nF+ +++ ++Fl+ Ls+e+ KIAA1677 50 CAEIMRLLDDFgvNIEGVREKLDTFLLDNFVPLMSRPDFLSyLSFEK 96 LielLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLs L ++L +D+L E e++eAv +W++hd R++h+ + +++R+ L++ KIAA1677 97 LMSYLDNDHLSRFPEIELYEAVQSWLRHDRR-RWRHTDTIIQNIRFCLMT 145 pkyLlevve<-* p+ e v+ KIAA1677 146 PTSVFEKVK 154 PF07707.5.ls: domain 1 of 1, from 50 to 154: score 73.5, E = 6.4e-19 *->CLgIrrfAday..gceeLaeaAdrfilqnFleVakseEFlq.Lskeq C I+r+ d ++ + e ++e+ d f+l nF+ +++ ++Fl+ Ls+e+ KIAA1677 50 CAEIMRLLDDFgvNIEGVREKLDTFLLDNFVPLMSRPDFLSyLSFEK 96 LielLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLs L ++L +D+L E e++eAv +W++hd R++h+ + +++R+ L++ KIAA1677 97 LMSYLDNDHLSRFPEIELYEAVQSWLRHDRR-RWRHTDTIIQNIRFCLMT 145 pkyLlevve<-* p+ e v+ KIAA1677 146 PTSVFEKVK 154 PF01344.15.ls: domain 1 of 5, from 233 to 283: score 26.5, E = 8.7e-05 *->pRsgagvvvldgkiYviGGydg......qslnsvevYDpetntWtkl p + + + +++ ++ GG +++++ ++++v++YDp+ n+W ++ KIAA1677 233 PLRPDCLAIVNNFVFLLGGEELgpdgefHASSKVFRYDPRQNSWLQM 279 psmp<-* ++m+ KIAA1677 280 ADMS 283 PF01344.15.fs: domain 1 of 5, from 233 to 283: score 24.5, E = 4e-06 *->pRsgagvvvldgkiYviGGydg......qslnsvevYDpetntWtkl p + + + +++ ++ GG +++++ ++++v++YDp+ n+W ++ KIAA1677 233 PLRPDCLAIVNNFVFLLGGEELgpdgefHASSKVFRYDPRQNSWLQM 279 psmp<-* ++m+ KIAA1677 280 ADMS 283 PF01344.15.ls: domain 2 of 5, from 285 to 330: score 37.8, E = 3.4e-08 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< pRs ++v v++ iY++ G++ ++ + s e+YD ++++W+++ + p KIAA1677 285 PRSEFAVGVIGKFIYAVAGRTRdETFYSTERYDITNDKWEFVDPYP 330 -* KIAA1677 - - PF01344.15.fs: domain 2 of 5, from 285 to 330: score 35.8, E = 2.4e-09 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< pRs ++v v++ iY++ G++ ++ + s e+YD ++++W+++ + p KIAA1677 285 PRSEFAVGVIGKFIYAVAGRTRdETFYSTERYDITNDKWEFVDPYP 330 -* KIAA1677 - - PF07646.5.ls: domain 2 of 4, from 285 to 330: score 14.7, E = 0.31 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr+ a+ v+g +y v G+ de + + ++d +W KIAA1677 285 PRSEFAVGVIGKFIYAVAGR--------TRDETFYSTERYDITNDKW 323 eklpalp<-* e + + p KIAA1677 324 EFVDPYP 330 PF01344.15.fs: domain 3 of 5, from 332 to 392: score 17.9, E = 0.0003 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpe............ +g+ +vl++k++++GG ++++ ++ v v+Dp+++++ +++++++ KIAA1677 332 NKYGHEGTVLNNKLFITGGITSsSTSKQVCVFDPSkegtieqrtrrt 378 ...tntWtklpsmp<-* + tn+W+ + m+ KIAA1677 379 qvvTNCWENKSKMN 392 PF01344.15.ls: domain 3 of 5, from 332 to 392: score 19.9, E = 0.0086 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpe............ +g+ +vl++k++++GG ++++ ++ v v+Dp+++++ +++++++ KIAA1677 332 NKYGHEGTVLNNKLFITGGITSsSTSKQVCVFDPSkegtieqrtrrt 378 ...tntWtklpsmp<-* + tn+W+ + m+ KIAA1677 379 qvvTNCWENKSKMN 392 PF07646.5.ls: domain 3 of 4, from 394 to 446: score 22.2, E = 0.0018 *->pryphasvvpggklyvvGGs..fkgnrgtgngdesssdllvldpetn r+ h +++++gklyv+GG+ + +++ g +s+ + +pet KIAA1677 394 ARCFHKMISYNGKLYVFGGVcvILRASFESQGCPSTEVY---NPETD 437 vWeklpalp<-* +W+ l+++p KIAA1677 438 QWTILASMP 446 PF01344.15.fs: domain 4 of 5, from 394 to 446: score 55.8, E = 5.1e-15 *->pRsgagvvvldgkiYviGGydg........qslnsvevYDpetntWt +R+++ + +++gk+Yv+GG++ + + ++q s evY+pet++Wt KIAA1677 394 ARCFHKMISYNGKLYVFGGVCVilrasfesQGCPSTEVYNPETDQWT 440 klpsmp<-* +l+smp KIAA1677 441 ILASMP 446 PF01344.15.ls: domain 4 of 5, from 394 to 446: score 57.8, E = 3.3e-14 *->pRsgagvvvldgkiYviGGydg........qslnsvevYDpetntWt +R+++ + +++gk+Yv+GG++ + + ++q s evY+pet++Wt KIAA1677 394 ARCFHKMISYNGKLYVFGGVCVilrasfesQGCPSTEVYNPETDQWT 440 klpsmp<-* +l+smp KIAA1677 441 ILASMP 446 PF07646.5.fs: domain 4 of 5, from 394 to 446: score 20.2, E = 0.00012 *->pryphasvvpggklyvvGGs..fkgnrgtgngdesssdllvldpetn r+ h +++++gklyv+GG+ + +++ g +s+ + +pet KIAA1677 394 ARCFHKMISYNGKLYVFGGVcvILRASFESQGCPSTEVY---NPETD 437 vWeklpalp<-* +W+ l+++p KIAA1677 438 QWTILASMP 446 PF01344.15.ls: domain 5 of 5, from 448 to 494: score 37.1, E = 5.6e-08 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp Rsg+gv+vld +i v GG + ++ +++s+ +Dp++n+W++ ++ KIAA1677 448 GRSGHGVTVLDKQIMVLGGLCYngHYSDSILTFDPDENKWKEDEYPR 494 <-* KIAA1677 - - PF07646.5.fs: domain 5 of 5, from 448 to 494: score 18.5, E = 0.00036 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r++h ++v++ ++ v GG ++++s+++l +dp++n+W KIAA1677 448 GRSGHGVTVLDKQIMVLGGL-------CYNGHYSDSILTFDPDENKW 487 eklpalp<-* ++ + KIAA1677 488 KEDEYPR 494 PF01344.15.fs: domain 5 of 5, from 448 to 494: score 35.1, E = 3.9e-09 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp Rsg+gv+vld +i v GG + ++ +++s+ +Dp++n+W++ ++ KIAA1677 448 GRSGHGVTVLDKQIMVLGGLCYngHYSDSILTFDPDENKWKEDEYPR 494 <-* KIAA1677 - - PF07646.5.ls: domain 4 of 4, from 448 to 494: score 20.4, E = 0.0061 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r++h ++v++ ++ v GG ++++s+++l +dp++n+W KIAA1677 448 GRSGHGVTVLDKQIMVLGGL-------CYNGHYSDSILTFDPDENKW 487 eklpalp<-* ++ + KIAA1677 488 KEDEYPR 494 //