hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09352722/chunk_1/iprscan-20080502-09352722.nocrc
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Query sequence: KIAA1677
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00612                                                 128.8    5.8e-34   5

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00612      1/5     245   296 ..     1    55 []    27.0   0.0026
SM00612      2/5     297   343 ..     1    55 []    30.5  0.00022
SM00612      3/5     344   405 ..     1    55 []    15.0     0.42
SM00612      4/5     406   459 ..     1    55 []    51.5  1.1e-10
SM00612      5/5     460   509 ..     1    55 []     4.8        6

Alignments of top-scoring domains:
SM00612: domain 1 of 5, from 245 to 296: score 27.0, E = 0.0026
                   *->kiYvvGGfdgttrclp.gegqrlksvEvYDpetnkWrpvpsMptpRs
                       ++  GG     +  p+ge +++++v++YDp+ n W ++++M++pRs
    KIAA1677   245    FVFLLGG--EELG--PdGEFHASSKVFRYDPRQNSWLQMADMSVPRS 287  

                   gagvaving<-*
                    ++v+vi++   
    KIAA1677   288 EFAVGVIGK    296  

SM00612: domain 2 of 5, from 297 to 343: score 30.5, E = 0.00022
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                       iY+v G+ +         +++ s+E+YD  ++kW+ v + p+  +g
    KIAA1677   297    FIYAVAGRTR--------DETFYSTERYDITNDKWEFVDPYPVNKYG 335  

                   agvaving<-*
                   +  +v+n+   
    KIAA1677   336 HEGTVLNN    343  

SM00612: domain 3 of 5, from 344 to 405: score 15.0, E = 0.42
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDp...............et
                      k++++GG           ++++k v v+Dp+++++ ++++++++  t
    KIAA1677   344    KLFITGGITS--------SSTSKQVCVFDPskegtieqrtrrtqvVT 382  

                   nkWrpvpsMptpRsgagvaving<-*
                   n W++  +M+++R+ + + + ng   
    KIAA1677   383 NCWENKSKMNYARCFHKMISYNG    405  

SM00612: domain 4 of 5, from 406 to 459: score 51.5, E = 1.1e-10
                   *->kiYvvGGfdgttrclp.gegqrlksvEvYDpetnkWrpvpsMptpRs
                      k+Yv+GG   + + + + e+q + s+EvY+pet++W++++sMp +Rs
    KIAA1677   406    KLYVFGG--VCVILRAsFESQGCPSTEVYNPETDQWTILASMPIGRS 450  

                   gagvaving<-*
                   g+gv+v+++   
    KIAA1677   451 GHGVTVLDK    459  

SM00612: domain 5 of 5, from 460 to 509: score 4.8, E = 6
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWr..pvpsMptpR
                      +i+v GG   +       g++++s+  +Dp++nkW++++ p Mp++ 
    KIAA1677   460    QIMVLGGLCYN-------GHYSDSILTFDPDENKWKedEYPRMPCKL 499  

                   sgagvaving<-*
                    g  v+ ++    
    KIAA1677   500 DGLQVCNLHF    509  

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