hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-09384777/chunk_1/iprscan-20080502-09384777.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1679 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00090.9.fs Thrombospondin type 1 domain 200.9 7.8e-60 15 PF00090.9.ls Thrombospondin type 1 domain 202.5 9.1e-58 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00090.9.ls 1/9 111 160 .. 1 55 [] 24.1 7.4e-05 PF00090.9.fs 1/15 111 160 .. 1 55 [] 22.2 4.9e-06 PF00090.9.fs 2/15 268 316 .. 1 49 [. 33.5 2e-09 PF00090.9.ls 2/9 268 326 .. 1 55 [] 33.5 6.8e-07 PF00090.9.fs 5/15 533 588 .. 1 55 [] 32.8 3.2e-09 PF00090.9.ls 3/9 533 588 .. 1 55 [] 34.7 3e-07 PF00090.9.ls 4/9 669 723 .. 1 55 [] 8.3 0.0059 PF00090.9.ls 5/9 803 851 .. 1 55 [] 8.0 0.0064 PF00090.9.fs 10/15 932 983 .. 1 55 [] 29.5 3.2e-08 PF00090.9.ls 6/9 932 983 .. 1 55 [] 31.4 2.9e-06 PF00090.9.ls 7/9 1061 1110 .. 1 55 [] 13.6 0.0013 PF00090.9.fs 14/15 1181 1231 .. 1 55 [] 29.4 3.3e-08 PF00090.9.ls 8/9 1181 1231 .. 1 55 [] 31.3 3.1e-06 PF00090.9.ls 9/9 1304 1360 .. 1 55 [] 17.5 0.00047 Alignments of top-scoring domains: PF00090.9.ls: domain 1 of 9, from 111 to 160: score 24.1, E = 7.4e-05 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s++ +WS CS+ CGk + R+R + +p P +gg +C+ ++ ++ KIAA1679 111 SEFLPWSNCSKGCGKKLQHRTRAVIAP-PL-FGGLQCPNLTE---SR 152 aCdmmdkC<-* aCd C KIAA1679 153 ACDAPISC 160 PF00090.9.fs: domain 1 of 15, from 111 to 160: score 22.2, E = 4.9e-06 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s++ +WS CS+ CGk + R+R + +p P +gg +C+ ++ ++ KIAA1679 111 SEFLPWSNCSKGCGKKLQHRTRAVIAP-PL-FGGLQCPNLTE---SR 152 aCdmmdkC<-* aCd C KIAA1679 153 ACDAPISC 160 PF00090.9.fs: domain 2 of 15, from 268 to 316: score 33.5, E = 2e-09 *->spWseWSpCSVTCGkGi.....rtRqRvcnspaPqkkggepCtgdvq s+Ws WSpCS+TC +G+ ++ r+R R+++++a gg+ C++ + KIAA1679 268 SQWSSWSPCSKTCRSGSllpgfRSRSRNVKHMA--IGGGKECPELLE 312 eleteaC<-* eaC KIAA1679 313 ---KEAC 316 PF00090.9.ls: domain 2 of 9, from 268 to 326: score 33.5, E = 6.8e-07 *->spWseWSpCSVTCGkGi.....rtRqRvcnspaPqkkggepCtgdvq s+Ws WSpCS+TC +G+ ++ r+R R+++++a gg+ C++ + KIAA1679 268 SQWSSWSPCSKTCRSGSllpgfRSRSRNVKHMA--IGGGKECPELLE 312 eleteaCdm....mdkC<-* eaC+ +++ + C KIAA1679 313 ---KEACIVegelLQQC 326 PF00090.9.fs: domain 5 of 15, from 533 to 588: score 32.8, E = 3.2e-09 *->spWseWSpCSVTCGk....GirtRqRvcnspaPqkkggepC.tgdvq s+W+eWS+CS +C++++++G +tR R++ + a +gg+pC++ ++ KIAA1679 533 SEWTEWSSCSQSCSNknsdGKQTRSRTILALAG--EGGKPCpPSQAL 577 eleteaCdmmdkC<-* + e + C + + C KIAA1679 578 Q-EHRLC-NDHSC 588 PF00090.9.ls: domain 3 of 9, from 533 to 588: score 34.7, E = 3e-07 *->spWseWSpCSVTCGk....GirtRqRvcnspaPqkkggepC.tgdvq s+W+eWS+CS +C++++++G +tR R++ + a +gg+pC++ ++ KIAA1679 533 SEWTEWSSCSQSCSNknsdGKQTRSRTILALAG--EGGKPCpPSQAL 577 eleteaCdmmdkC<-* + e + C + + C KIAA1679 578 Q-EHRLC-NDHSC 588 PF00090.9.ls: domain 4 of 9, from 669 to 723: score 8.3, E = 0.0059 *->spWseWSpCSVTCGkG....irtRqRvcnspaPqkkggepCtgdvqe + +seW+pC C G+ + ++R+R + ++a gg+ C+++ e KIAA1679 669 TAFSEWTPCPRMCQAGnatvKQSRYRIIIQEAA--NGGQECPDTLYE 713 leteaCdmmdkC<-* + C+ + C KIAA1679 714 --ERECEDVSLC 723 PF00090.9.ls: domain 5 of 9, from 803 to 851: score 8.0, E = 0.0064 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe..le + Ws +pCS C +++R+R +++ ++e C + + + +e KIAA1679 803 TAWSKFTPCSTNCEA-TKSRRRQLTGKS---RKKEKCQDSDLYplVE 845 teaCdmmdkC<-* te C +C KIAA1679 846 TELC----PC 851 PF00090.9.fs: domain 10 of 15, from 932 to 983: score 29.5, E = 3.2e-08 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s+Ws W +CS +CG G+r+R + + + P gg pC+ + + + KIAA1679 932 SDWSSWGSCSSSCGIGVRIRSKWLKEK-PY-NGGRPCPKLDLKNQAQ 976 aCdmmdkC<-* + ++ +C KIAA1679 977 VH-EAVPC 983 PF00090.9.ls: domain 6 of 9, from 932 to 983: score 31.4, E = 2.9e-06 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s+Ws W +CS +CG G+r+R + + + P gg pC+ + + + KIAA1679 932 SDWSSWGSCSSSCGIGVRIRSKWLKEK-PY-NGGRPCPKLDLKNQAQ 976 aCdmmdkC<-* + ++ +C KIAA1679 977 VH-EAVPC 983 PF00090.9.ls: domain 7 of 9, from 1061 to 1110: score 13.6, E = 0.0013 *->spWseWSpCSVTCG...kGirtRqRvcnspaPqkkggepCtgdvqel s+W+ WS C +C +++++ rtR+ ++ s ++ C +d q KIAA1679 1061 SEWGLWSKCPQSCDphtMQRRTRHLLRPSL-----NSRTCAEDSQ-- 1100 eteaCdmmdkC<-* +++C + C KIAA1679 1101 -VQPCLLNENC 1110 PF00090.9.fs: domain 14 of 15, from 1181 to 1231: score 29.4, E = 3.3e-08 *->spWseWSpCSVTCG.kGirtRqRvcnspaPqkkggepCtgdvqelet s W+ W++CS TCG++G ++R+R + +p + +g pC+ + ++ KIAA1679 1181 SGWTAWTECSQTCGhGGRMSRTRFIIMPTQ--GEGRPCPTELTQ--E 1223 eaCdmmdkC<-* + C + +C KIAA1679 1224 KTC-PVTPC 1231 PF00090.9.ls: domain 8 of 9, from 1181 to 1231: score 31.3, E = 3.1e-06 *->spWseWSpCSVTCG.kGirtRqRvcnspaPqkkggepCtgdvqelet s W+ W++CS TCG++G ++R+R + +p + +g pC+ + ++ KIAA1679 1181 SGWTAWTECSQTCGhGGRMSRTRFIIMPTQ--GEGRPCPTELTQ--E 1223 eaCdmmdkC<-* + C + +C KIAA1679 1224 KTC-PVTPC 1231 PF00090.9.ls: domain 9 of 9, from 1304 to 1360: score 17.5, E = 0.00047 *->spWseWSpCSVTCGkG.........irtRqRvcnspaPqkkggepCt ++WseWS C TC G++ ++ ++++r+R+ ++s ++ +C+ KIAA1679 1304 TEWSEWSTCELTCIDGrsfetvgrqSRSRTFIIQSF----ENQDSCP 1346 gdvqeleteaCdmmdkC<-* +v e t++C + kC KIAA1679 1347 QQVLE--TRPC-TGGKC 1360 //